miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 3' -50.7 NC_005261.1 + 26 0.72 0.881501
Target:  5'- cCCCGCGcgaccccggggGGGUGuuuuuuGGggGGGGg -3'
miRNA:   3'- -GGGCGCaa---------CCCGCuuuuu-UCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 421 0.68 0.977626
Target:  5'- uCCCGCGacgGGGUgcccacggaccgGGAcgGGGAcGGGGg -3'
miRNA:   3'- -GGGCGCaa-CCCG------------CUUuuUUCUuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 470 0.75 0.741734
Target:  5'- gCCgGCGggaUGGcGCGggGaggagagGAGGGAGGGGg -3'
miRNA:   3'- -GGgCGCa--ACC-CGCuuU-------UUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 605 0.71 0.921644
Target:  5'- uUCGCGgaGGGCGAGugcccGAcgcAGGGGa -3'
miRNA:   3'- gGGCGCaaCCCGCUUuuuu-CU---UCCCC- -5'
23834 3' -50.7 NC_005261.1 + 1008 0.67 0.988136
Target:  5'- --gGCGggGGGCGggGGGcgggugggcuuuugcGGAGGGcGGc -3'
miRNA:   3'- gggCGCaaCCCGCuuUUU---------------UCUUCC-CC- -5'
23834 3' -50.7 NC_005261.1 + 4822 0.72 0.875647
Target:  5'- cUCCGCGUUGGGCGc----AGgcGGcGGc -3'
miRNA:   3'- -GGGCGCAACCCGCuuuuuUCuuCC-CC- -5'
23834 3' -50.7 NC_005261.1 + 5288 0.74 0.818506
Target:  5'- gCCGCGgugcgcgcGGGUcccuggagaGGAGGAGGAGGGGGu -3'
miRNA:   3'- gGGCGCaa------CCCG---------CUUUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 5648 0.7 0.937621
Target:  5'- --gGgGggGGGCGGgcaacgaggAGGGAGAGGGGGa -3'
miRNA:   3'- gggCgCaaCCCGCU---------UUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 5840 0.67 0.989012
Target:  5'- gCCGgGUUacGGCGGccGAGAGAGGGGu -3'
miRNA:   3'- gGGCgCAAc-CCGCUu-UUUUCUUCCCc -5'
23834 3' -50.7 NC_005261.1 + 6411 0.66 0.995955
Target:  5'- gCgCGCGUUGGcccggccugcucGCGAGGGcGGuccGGGGGc -3'
miRNA:   3'- -GgGCGCAACC------------CGCUUUUuUCu--UCCCC- -5'
23834 3' -50.7 NC_005261.1 + 6579 0.71 0.932548
Target:  5'- gCCUGCaGUU-GGCGggGGGAauGGGGGa -3'
miRNA:   3'- -GGGCG-CAAcCCGCuuUUUUcuUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 7054 0.68 0.982314
Target:  5'- cUCCGCGUccGGGCGuguggcccAGGGGc -3'
miRNA:   3'- -GGGCGCAa-CCCGCuuuuuucuUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 7106 0.67 0.989969
Target:  5'- aCUCGCGgu-GGCGcucucuuaacagccAGAGGAGAAGGaGGa -3'
miRNA:   3'- -GGGCGCaacCCGC--------------UUUUUUCUUCC-CC- -5'
23834 3' -50.7 NC_005261.1 + 7988 0.78 0.60789
Target:  5'- gCCCGg--UGGGagaGggGGGAGAGGGGGg -3'
miRNA:   3'- -GGGCgcaACCCg--CuuUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 8828 0.75 0.742733
Target:  5'- gCCCGcCGggcaaggGGGCGggGAcaggccguGGGAGGGGc -3'
miRNA:   3'- -GGGC-GCaa-----CCCGCuuUUu-------UCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 9615 0.7 0.942444
Target:  5'- gCCCGgGgUGGGCaGGcgGGGGuGGGGGc -3'
miRNA:   3'- -GGGCgCaACCCG-CUuuUUUCuUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 11435 0.68 0.975097
Target:  5'- -gCGgGggGGGCGGcgGAAGAGGGa- -3'
miRNA:   3'- ggGCgCaaCCCGCUuuUUUCUUCCcc -5'
23834 3' -50.7 NC_005261.1 + 11465 0.67 0.985881
Target:  5'- --aGCGgagcGGGCGcgGAGGGgcGGGGc -3'
miRNA:   3'- gggCGCaa--CCCGCuuUUUUCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 11540 1.14 0.004581
Target:  5'- cCCCGCGUUGGGCGAAAAAAGAAGGGGg -3'
miRNA:   3'- -GGGCGCAACCCGCUUUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 11785 0.77 0.670904
Target:  5'- aUuuGCG--GGGCgGAGGGGGGAAGGGGg -3'
miRNA:   3'- -GggCGCaaCCCG-CUUUUUUCUUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.