miRNA display CGI


Results 81 - 100 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 705 0.71 0.244878
Target:  5'- cGCCCCccUCCCCCCUUCC-CCGg--- -3'
miRNA:   3'- aCGGGGa-AGGGGGGGGGGcGGCauau -5'
23834 5' -64.7 NC_005261.1 + 61687 0.71 0.244878
Target:  5'- cGCCCCgacccucacUCCCCaUCCgCCCGcCCGUGUGc -3'
miRNA:   3'- aCGGGGa--------AGGGG-GGG-GGGC-GGCAUAU- -5'
23834 5' -64.7 NC_005261.1 + 89430 0.71 0.244878
Target:  5'- gGCCgCCgggcUCCCCgCgCCCGCCGUGc- -3'
miRNA:   3'- aCGG-GGa---AGGGGgGgGGGCGGCAUau -5'
23834 5' -64.7 NC_005261.1 + 67922 0.71 0.250586
Target:  5'- gGCCCUUUUgCgucauuguCCCCCCCGCCGg--- -3'
miRNA:   3'- aCGGGGAAGgG--------GGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 22279 0.71 0.250586
Target:  5'- -cCCUCUUCCgccgCCCCCCCCGCCc---- -3'
miRNA:   3'- acGGGGAAGG----GGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 52097 0.71 0.250586
Target:  5'- -cCCCCUUCCCCCCCUCUcCUGcGUGa -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGcGGCaUAU- -5'
23834 5' -64.7 NC_005261.1 + 67745 0.72 0.189
Target:  5'- aGCUCgUccUCCUCCCCCUCGCCGUc-- -3'
miRNA:   3'- aCGGGgA--AGGGGGGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 14572 0.72 0.189
Target:  5'- gGCCcaugCCUUCCCCCCCCCCcCCc---- -3'
miRNA:   3'- aCGG----GGAAGGGGGGGGGGcGGcauau -5'
23834 5' -64.7 NC_005261.1 + 106337 0.72 0.193577
Target:  5'- gGCCCCgccgccgcgUCCgCCCCCgCCGCCGc--- -3'
miRNA:   3'- aCGGGGa--------AGGgGGGGG-GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 6831 0.72 0.203023
Target:  5'- cGCCCCcgCCCCCccccacccaCCCCCGCCc---- -3'
miRNA:   3'- aCGGGGaaGGGGG---------GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 114894 0.72 0.203023
Target:  5'- -cCCCCUUCCCCCCUgCUGCCc---- -3'
miRNA:   3'- acGGGGAAGGGGGGGgGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 11654 0.72 0.207895
Target:  5'- aGCCCCgccggagCCCCUgaaCCCCGCCGg--- -3'
miRNA:   3'- aCGGGGaa-----GGGGGg--GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 128717 0.72 0.207895
Target:  5'- cGCgCCCgggCCCCgCCCgCCCGCCGa--- -3'
miRNA:   3'- aCG-GGGaa-GGGG-GGG-GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 132454 0.72 0.207895
Target:  5'- gUGCCCCUcggCCgCCCUCCgCGCCGg--- -3'
miRNA:   3'- -ACGGGGAa--GGgGGGGGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 11145 0.72 0.212867
Target:  5'- cGCCgCUcUCCCCCUCCCCuccCCGUAUc -3'
miRNA:   3'- aCGGgGA-AGGGGGGGGGGc--GGCAUAu -5'
23834 5' -64.7 NC_005261.1 + 77826 0.72 0.212867
Target:  5'- cGCCCCagcaccaCCgCCCCCCUCGCCGc--- -3'
miRNA:   3'- aCGGGGaa-----GG-GGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 16356 0.72 0.217941
Target:  5'- gGCUCCgUCCUCUUCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGaAGGGGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 48628 0.72 0.217941
Target:  5'- aGCCCCacgCCCCgCCCCUgCGCCGg--- -3'
miRNA:   3'- aCGGGGaa-GGGG-GGGGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 35657 0.73 0.163494
Target:  5'- aGCCCCgcUCCCgCUCCCUGCCGg--- -3'
miRNA:   3'- aCGGGGa-AGGGgGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 78114 0.73 0.167519
Target:  5'- gGCCCCggCCCCaccgcucgccaCCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGaaGGGGg----------GGGGGCGGCauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.