miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 131402 0.69 0.327811
Target:  5'- cGCCaCCgagCCCCCCgCCgCUGCCGg--- -3'
miRNA:   3'- aCGG-GGaa-GGGGGG-GG-GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 134866 0.69 0.327811
Target:  5'- gGCgCCCgcgCCCCCgcgggCCCCUGCUGUGc- -3'
miRNA:   3'- aCG-GGGaa-GGGGG-----GGGGGCGGCAUau -5'
23834 5' -64.7 NC_005261.1 + 582 0.69 0.327811
Target:  5'- cGCUCCUcCCCCCuCCCCCuCUGUu-- -3'
miRNA:   3'- aCGGGGAaGGGGG-GGGGGcGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 61630 0.69 0.327811
Target:  5'- cGCCCCgcuggCCgCCCgUCCGCCGg--- -3'
miRNA:   3'- aCGGGGaa---GGgGGGgGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 119525 0.69 0.334986
Target:  5'- gGCCCCggUCCCCgCggccgagcaaggCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGa-AGGGGgG------------GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 28073 0.7 0.256404
Target:  5'- uUGCCCg--CCCCCCCCCCuacucgucgcGCCGc--- -3'
miRNA:   3'- -ACGGGgaaGGGGGGGGGG----------CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 93706 0.7 0.256404
Target:  5'- gUGCCUCUUCCUCCUCgUCGUCGUcgGc -3'
miRNA:   3'- -ACGGGGAAGGGGGGGgGGCGGCAuaU- -5'
23834 5' -64.7 NC_005261.1 + 105053 0.7 0.256404
Target:  5'- cGCCCCUccccagCCCUCCCCggcaggguCCGCCGa--- -3'
miRNA:   3'- aCGGGGAa-----GGGGGGGG--------GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 5684 0.7 0.262332
Target:  5'- aGCuCCCUccccUCCCucuCCUCCCCGCCGg--- -3'
miRNA:   3'- aCG-GGGA----AGGG---GGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 115887 0.7 0.268371
Target:  5'- -cUCCCUcgccgCCUCCUCCCCGCCGUc-- -3'
miRNA:   3'- acGGGGAa----GGGGGGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 100 0.7 0.287161
Target:  5'- cGCCCCcgggCCCCgCCgCCCgCGCCGg--- -3'
miRNA:   3'- aCGGGGaa--GGGG-GG-GGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 137783 0.7 0.287161
Target:  5'- cGCCCCcgggCCCCgCCgCCCgCGCCGg--- -3'
miRNA:   3'- aCGGGGaa--GGGG-GG-GGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 82533 0.7 0.293651
Target:  5'- gGCCCCauccucgCCCCCCuCCUCGCCc---- -3'
miRNA:   3'- aCGGGGaa-----GGGGGG-GGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 32711 0.71 0.223118
Target:  5'- cGCCCCccgCCCCCCgCCC-CCGUc-- -3'
miRNA:   3'- aCGGGGaa-GGGGGGgGGGcGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 53338 0.71 0.228399
Target:  5'- cGCCUCUgCgCCCgCCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGAaGgGGG-GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 67779 0.71 0.228399
Target:  5'- cGCCCCcggccgCCCCCuCCUCCGCCu---- -3'
miRNA:   3'- aCGGGGaa----GGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 33187 0.71 0.233785
Target:  5'- cGCCCUg-CCCCCCgCCCGCCc---- -3'
miRNA:   3'- aCGGGGaaGGGGGGgGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 33273 0.71 0.233785
Target:  5'- gGCCCCcgUCCCCgUCCCgGuCCGUGg- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGgC-GGCAUau -5'
23834 5' -64.7 NC_005261.1 + 82425 0.71 0.239278
Target:  5'- gGCCCCgccgUCCgCgCCCCCgGCCGg--- -3'
miRNA:   3'- aCGGGGa---AGGgG-GGGGGgCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 16322 0.71 0.244878
Target:  5'- gGCCC--UCCCCCUCgCCGCCGg--- -3'
miRNA:   3'- aCGGGgaAGGGGGGGgGGCGGCauau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.