Results 61 - 80 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23834 | 5' | -64.7 | NC_005261.1 | + | 131402 | 0.69 | 0.327811 |
Target: 5'- cGCCaCCgagCCCCCCgCCgCUGCCGg--- -3' miRNA: 3'- aCGG-GGaa-GGGGGG-GG-GGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 134866 | 0.69 | 0.327811 |
Target: 5'- gGCgCCCgcgCCCCCgcgggCCCCUGCUGUGc- -3' miRNA: 3'- aCG-GGGaa-GGGGG-----GGGGGCGGCAUau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 582 | 0.69 | 0.327811 |
Target: 5'- cGCUCCUcCCCCCuCCCCCuCUGUu-- -3' miRNA: 3'- aCGGGGAaGGGGG-GGGGGcGGCAuau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 61630 | 0.69 | 0.327811 |
Target: 5'- cGCCCCgcuggCCgCCCgUCCGCCGg--- -3' miRNA: 3'- aCGGGGaa---GGgGGGgGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 119525 | 0.69 | 0.334986 |
Target: 5'- gGCCCCggUCCCCgCggccgagcaaggCCCCGCCGc--- -3' miRNA: 3'- aCGGGGa-AGGGGgG------------GGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 28073 | 0.7 | 0.256404 |
Target: 5'- uUGCCCg--CCCCCCCCCCuacucgucgcGCCGc--- -3' miRNA: 3'- -ACGGGgaaGGGGGGGGGG----------CGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 93706 | 0.7 | 0.256404 |
Target: 5'- gUGCCUCUUCCUCCUCgUCGUCGUcgGc -3' miRNA: 3'- -ACGGGGAAGGGGGGGgGGCGGCAuaU- -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 105053 | 0.7 | 0.256404 |
Target: 5'- cGCCCCUccccagCCCUCCCCggcaggguCCGCCGa--- -3' miRNA: 3'- aCGGGGAa-----GGGGGGGG--------GGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 5684 | 0.7 | 0.262332 |
Target: 5'- aGCuCCCUccccUCCCucuCCUCCCCGCCGg--- -3' miRNA: 3'- aCG-GGGA----AGGG---GGGGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 115887 | 0.7 | 0.268371 |
Target: 5'- -cUCCCUcgccgCCUCCUCCCCGCCGUc-- -3' miRNA: 3'- acGGGGAa----GGGGGGGGGGCGGCAuau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 100 | 0.7 | 0.287161 |
Target: 5'- cGCCCCcgggCCCCgCCgCCCgCGCCGg--- -3' miRNA: 3'- aCGGGGaa--GGGG-GG-GGG-GCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 137783 | 0.7 | 0.287161 |
Target: 5'- cGCCCCcgggCCCCgCCgCCCgCGCCGg--- -3' miRNA: 3'- aCGGGGaa--GGGG-GG-GGG-GCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 82533 | 0.7 | 0.293651 |
Target: 5'- gGCCCCauccucgCCCCCCuCCUCGCCc---- -3' miRNA: 3'- aCGGGGaa-----GGGGGG-GGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 32711 | 0.71 | 0.223118 |
Target: 5'- cGCCCCccgCCCCCCgCCC-CCGUc-- -3' miRNA: 3'- aCGGGGaa-GGGGGGgGGGcGGCAuau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 53338 | 0.71 | 0.228399 |
Target: 5'- cGCCUCUgCgCCCgCCCCCGCCGc--- -3' miRNA: 3'- aCGGGGAaGgGGG-GGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 67779 | 0.71 | 0.228399 |
Target: 5'- cGCCCCcggccgCCCCCuCCUCCGCCu---- -3' miRNA: 3'- aCGGGGaa----GGGGG-GGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 33187 | 0.71 | 0.233785 |
Target: 5'- cGCCCUg-CCCCCCgCCCGCCc---- -3' miRNA: 3'- aCGGGGaaGGGGGGgGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 33273 | 0.71 | 0.233785 |
Target: 5'- gGCCCCcgUCCCCgUCCCgGuCCGUGg- -3' miRNA: 3'- aCGGGGa-AGGGGgGGGGgC-GGCAUau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 82425 | 0.71 | 0.239278 |
Target: 5'- gGCCCCgccgUCCgCgCCCCCgGCCGg--- -3' miRNA: 3'- aCGGGGa---AGGgG-GGGGGgCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 16322 | 0.71 | 0.244878 |
Target: 5'- gGCCC--UCCCCCUCgCCGCCGg--- -3' miRNA: 3'- aCGGGgaAGGGGGGGgGGCGGCauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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