Results 61 - 80 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23834 | 5' | -64.7 | NC_005261.1 | + | 37702 | 0.66 | 0.455841 |
Target: 5'- gGCgCCUUCgUCCCCCaagcccucggCCCGCCGg--- -3' miRNA: 3'- aCGgGGAAG-GGGGGG----------GGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 37736 | 0.66 | 0.491855 |
Target: 5'- aGCCCCccgUCgCCCCCCgcgggCGCCGc--- -3' miRNA: 3'- aCGGGGa--AGgGGGGGGg----GCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 39578 | 0.68 | 0.342275 |
Target: 5'- -cCCCCUcUCCCUCCCCagCGCCGa--- -3' miRNA: 3'- acGGGGA-AGGGGGGGGg-GCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 48628 | 0.72 | 0.217941 |
Target: 5'- aGCCCCacgCCCCgCCCCUgCGCCGg--- -3' miRNA: 3'- aCGGGGaa-GGGG-GGGGG-GCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 49986 | 0.68 | 0.349678 |
Target: 5'- cGCCgCCgucgUCCCCCCCgagCCgCGCCGc--- -3' miRNA: 3'- aCGG-GGa---AGGGGGGG---GG-GCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 52036 | 0.66 | 0.491855 |
Target: 5'- gGCCaacgCCCgCCCCgCCCGCCGc--- -3' miRNA: 3'- aCGGggaaGGG-GGGG-GGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 52097 | 0.71 | 0.250586 |
Target: 5'- -cCCCCUUCCCCCCCUCUcCUGcGUGa -3' miRNA: 3'- acGGGGAAGGGGGGGGGGcGGCaUAU- -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 53338 | 0.71 | 0.228399 |
Target: 5'- cGCCUCUgCgCCCgCCCCCGCCGc--- -3' miRNA: 3'- aCGGGGAaGgGGG-GGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 59152 | 0.68 | 0.346703 |
Target: 5'- cGCCCCgggcgcgcggcgCCCgCCCCagCCCGCCGa--- -3' miRNA: 3'- aCGGGGaa----------GGG-GGGG--GGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 61630 | 0.69 | 0.327811 |
Target: 5'- cGCCCCgcuggCCgCCCgUCCGCCGg--- -3' miRNA: 3'- aCGGGGaa---GGgGGGgGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 61687 | 0.71 | 0.244878 |
Target: 5'- cGCCCCgacccucacUCCCCaUCCgCCCGcCCGUGUGc -3' miRNA: 3'- aCGGGGa--------AGGGG-GGG-GGGC-GGCAUAU- -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 67267 | 0.69 | 0.32075 |
Target: 5'- cGCCgCCagCCCggccagcagcagCCCCCCCGCCGc--- -3' miRNA: 3'- aCGG-GGaaGGG------------GGGGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 67745 | 0.72 | 0.189 |
Target: 5'- aGCUCgUccUCCUCCCCCUCGCCGUc-- -3' miRNA: 3'- aCGGGgA--AGGGGGGGGGGCGGCAuau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 67779 | 0.71 | 0.228399 |
Target: 5'- cGCCCCcggccgCCCCCuCCUCCGCCu---- -3' miRNA: 3'- aCGGGGaa----GGGGG-GGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 67922 | 0.71 | 0.250586 |
Target: 5'- gGCCCUUUUgCgucauuguCCCCCCCGCCGg--- -3' miRNA: 3'- aCGGGGAAGgG--------GGGGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 68193 | 0.75 | 0.124665 |
Target: 5'- gGCCCCcUCgCCCCCgCCGCCGg--- -3' miRNA: 3'- aCGGGGaAGgGGGGGgGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 72659 | 0.66 | 0.455841 |
Target: 5'- cGCCUCgggCCCCCCCggcgucaucuCCCGCgCGa--- -3' miRNA: 3'- aCGGGGaa-GGGGGGG----------GGGCG-GCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 76349 | 0.75 | 0.121593 |
Target: 5'- cGCCCCcUCCCCUCCCCgCGCgCGcGUGc -3' miRNA: 3'- aCGGGGaAGGGGGGGGG-GCG-GCaUAU- -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 76972 | 0.66 | 0.491855 |
Target: 5'- aGCCUgUguggCCCCCUUCCGCCGg--- -3' miRNA: 3'- aCGGGgAag--GGGGGGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 77491 | 0.67 | 0.404626 |
Target: 5'- cGCCCCguacUUCCUgCCgCCCGCCa---- -3' miRNA: 3'- aCGGGG----AAGGGgGGgGGGCGGcauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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