miRNA display CGI


Results 61 - 80 of 120 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 37702 0.66 0.455841
Target:  5'- gGCgCCUUCgUCCCCCaagcccucggCCCGCCGg--- -3'
miRNA:   3'- aCGgGGAAG-GGGGGG----------GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 37736 0.66 0.491855
Target:  5'- aGCCCCccgUCgCCCCCCgcgggCGCCGc--- -3'
miRNA:   3'- aCGGGGa--AGgGGGGGGg----GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 39578 0.68 0.342275
Target:  5'- -cCCCCUcUCCCUCCCCagCGCCGa--- -3'
miRNA:   3'- acGGGGA-AGGGGGGGGg-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 48628 0.72 0.217941
Target:  5'- aGCCCCacgCCCCgCCCCUgCGCCGg--- -3'
miRNA:   3'- aCGGGGaa-GGGG-GGGGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 49986 0.68 0.349678
Target:  5'- cGCCgCCgucgUCCCCCCCgagCCgCGCCGc--- -3'
miRNA:   3'- aCGG-GGa---AGGGGGGG---GG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 52036 0.66 0.491855
Target:  5'- gGCCaacgCCCgCCCCgCCCGCCGc--- -3'
miRNA:   3'- aCGGggaaGGG-GGGG-GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 52097 0.71 0.250586
Target:  5'- -cCCCCUUCCCCCCCUCUcCUGcGUGa -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGcGGCaUAU- -5'
23834 5' -64.7 NC_005261.1 + 53338 0.71 0.228399
Target:  5'- cGCCUCUgCgCCCgCCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGAaGgGGG-GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 59152 0.68 0.346703
Target:  5'- cGCCCCgggcgcgcggcgCCCgCCCCagCCCGCCGa--- -3'
miRNA:   3'- aCGGGGaa----------GGG-GGGG--GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 61630 0.69 0.327811
Target:  5'- cGCCCCgcuggCCgCCCgUCCGCCGg--- -3'
miRNA:   3'- aCGGGGaa---GGgGGGgGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 61687 0.71 0.244878
Target:  5'- cGCCCCgacccucacUCCCCaUCCgCCCGcCCGUGUGc -3'
miRNA:   3'- aCGGGGa--------AGGGG-GGG-GGGC-GGCAUAU- -5'
23834 5' -64.7 NC_005261.1 + 67267 0.69 0.32075
Target:  5'- cGCCgCCagCCCggccagcagcagCCCCCCCGCCGc--- -3'
miRNA:   3'- aCGG-GGaaGGG------------GGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 67745 0.72 0.189
Target:  5'- aGCUCgUccUCCUCCCCCUCGCCGUc-- -3'
miRNA:   3'- aCGGGgA--AGGGGGGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 67779 0.71 0.228399
Target:  5'- cGCCCCcggccgCCCCCuCCUCCGCCu---- -3'
miRNA:   3'- aCGGGGaa----GGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 67922 0.71 0.250586
Target:  5'- gGCCCUUUUgCgucauuguCCCCCCCGCCGg--- -3'
miRNA:   3'- aCGGGGAAGgG--------GGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 68193 0.75 0.124665
Target:  5'- gGCCCCcUCgCCCCCgCCGCCGg--- -3'
miRNA:   3'- aCGGGGaAGgGGGGGgGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 72659 0.66 0.455841
Target:  5'- cGCCUCgggCCCCCCCggcgucaucuCCCGCgCGa--- -3'
miRNA:   3'- aCGGGGaa-GGGGGGG----------GGGCG-GCauau -5'
23834 5' -64.7 NC_005261.1 + 76349 0.75 0.121593
Target:  5'- cGCCCCcUCCCCUCCCCgCGCgCGcGUGc -3'
miRNA:   3'- aCGGGGaAGGGGGGGGG-GCG-GCaUAU- -5'
23834 5' -64.7 NC_005261.1 + 76972 0.66 0.491855
Target:  5'- aGCCUgUguggCCCCCUUCCGCCGg--- -3'
miRNA:   3'- aCGGGgAag--GGGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 77491 0.67 0.404626
Target:  5'- cGCCCCguacUUCCUgCCgCCCGCCa---- -3'
miRNA:   3'- aCGGGG----AAGGGgGGgGGGCGGcauau -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.