miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 22279 0.71 0.250586
Target:  5'- -cCCUCUUCCgccgCCCCCCCCGCCc---- -3'
miRNA:   3'- acGGGGAAGG----GGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 22345 0.66 0.455841
Target:  5'- -cUCCCUccauucauUUCCCCCCCCCGUCu---- -3'
miRNA:   3'- acGGGGA--------AGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 24078 0.75 0.134315
Target:  5'- gGCCCCgcccacccagCCCCCaCCCCCGCCu---- -3'
miRNA:   3'- aCGGGGaa--------GGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 24252 0.69 0.313803
Target:  5'- aGCCCCU--CCCCCCUCUGCgGg--- -3'
miRNA:   3'- aCGGGGAagGGGGGGGGGCGgCauau -5'
23834 5' -64.7 NC_005261.1 + 24868 0.68 0.342275
Target:  5'- gGCCCCUcccacggccugUCCCCgCCCCCUuGCCc---- -3'
miRNA:   3'- aCGGGGA-----------AGGGG-GGGGGG-CGGcauau -5'
23834 5' -64.7 NC_005261.1 + 25719 0.68 0.388378
Target:  5'- aGCCCCccUCUCCCCCCUCucccaccggGCCGc--- -3'
miRNA:   3'- aCGGGGa-AGGGGGGGGGG---------CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 26421 0.69 0.300254
Target:  5'- -cCCCCUUCUCUCCCUCUGCCcUGUc -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGCGGcAUAu -5'
23834 5' -64.7 NC_005261.1 + 26535 0.66 0.464714
Target:  5'- -cCCCCcUCCCCCCuuCUCCGCCu---- -3'
miRNA:   3'- acGGGGaAGGGGGG--GGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 27120 0.68 0.349678
Target:  5'- aUGCCagaCCUcCCCCauuCCCCCCGCCa---- -3'
miRNA:   3'- -ACGG---GGAaGGGG---GGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 28073 0.7 0.256404
Target:  5'- uUGCCCg--CCCCCCCCCCuacucgucgcGCCGc--- -3'
miRNA:   3'- -ACGGGgaaGGGGGGGGGG----------CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 28140 0.67 0.412909
Target:  5'- cGCCCUcggcgCCCCCaUCUCCGCCGc--- -3'
miRNA:   3'- aCGGGGaa---GGGGG-GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 30914 0.69 0.32075
Target:  5'- cGCCCgg-CCCCUCCCggCCGCCGg--- -3'
miRNA:   3'- aCGGGgaaGGGGGGGG--GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 31094 0.67 0.421296
Target:  5'- gGCCCCaugCCgCCCggcggCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGaa-GGgGGG-----GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 32711 0.71 0.223118
Target:  5'- cGCCCCccgCCCCCCgCCC-CCGUc-- -3'
miRNA:   3'- aCGGGGaa-GGGGGGgGGGcGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 33187 0.71 0.233785
Target:  5'- cGCCCUg-CCCCCCgCCCGCCc---- -3'
miRNA:   3'- aCGGGGaaGGGGGGgGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 33273 0.71 0.233785
Target:  5'- gGCCCCcgUCCCCgUCCCgGuCCGUGg- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGgC-GGCAUau -5'
23834 5' -64.7 NC_005261.1 + 33637 0.73 0.180131
Target:  5'- cGCCCCgcaCCCCgCCCCCGCgCGc--- -3'
miRNA:   3'- aCGGGGaa-GGGGgGGGGGCG-GCauau -5'
23834 5' -64.7 NC_005261.1 + 35387 0.74 0.151937
Target:  5'- gGCCCCgaCCCCCgCCCCCGCg----- -3'
miRNA:   3'- aCGGGGaaGGGGG-GGGGGCGgcauau -5'
23834 5' -64.7 NC_005261.1 + 35657 0.73 0.163494
Target:  5'- aGCCCCgcUCCCgCUCCCUGCCGg--- -3'
miRNA:   3'- aCGGGGa-AGGGgGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 36694 0.66 0.455841
Target:  5'- aGUCCCUcggCCCCCCgCgcugaCCGCCGg--- -3'
miRNA:   3'- aCGGGGAa--GGGGGG-Gg----GGCGGCauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.