miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 6681 0.75 0.123428
Target:  5'- cGCCCCcaggucuuucuucUCCUCCCCCCCGCCa---- -3'
miRNA:   3'- aCGGGGa------------AGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 68193 0.75 0.124665
Target:  5'- gGCCCCcUCgCCCCCgCCGCCGg--- -3'
miRNA:   3'- aCGGGGaAGgGGGGGgGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 9581 0.75 0.127808
Target:  5'- aGCCCCgcccacccagCCCCCaCCCCCGCCu---- -3'
miRNA:   3'- aCGGGGaa--------GGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 24078 0.75 0.134315
Target:  5'- gGCCCCgcccacccagCCCCCaCCCCCGCCu---- -3'
miRNA:   3'- aCGGGGaa--------GGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 137591 0.74 0.144649
Target:  5'- cGCCCC-UCCCCCaCCCCgCGCCc---- -3'
miRNA:   3'- aCGGGGaAGGGGG-GGGG-GCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 83987 0.74 0.148253
Target:  5'- -cCCCCUUUCCCCCUCCCGCgGc--- -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGCGgCauau -5'
23834 5' -64.7 NC_005261.1 + 11575 1.06 0.000679
Target:  5'- aUGCCCCUUCCCCCCCCCCGCCGUAUAc -3'
miRNA:   3'- -ACGGGGAAGGGGGGGGGGCGGCAUAU- -5'
23834 5' -64.7 NC_005261.1 + 784 0.74 0.151937
Target:  5'- -uCCCCgcCCCCCCCCCgCGCCGc--- -3'
miRNA:   3'- acGGGGaaGGGGGGGGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 8313 0.74 0.155705
Target:  5'- cUGCCCCUcacccUCUCCUCCCCCgacccgcgcGCCGUGc- -3'
miRNA:   3'- -ACGGGGA-----AGGGGGGGGGG---------CGGCAUau -5'
23834 5' -64.7 NC_005261.1 + 35657 0.73 0.163494
Target:  5'- aGCCCCgcUCCCgCUCCCUGCCGg--- -3'
miRNA:   3'- aCGGGGa-AGGGgGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 78114 0.73 0.167519
Target:  5'- gGCCCCggCCCCaccgcucgccaCCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGaaGGGGg----------GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 119430 0.73 0.175836
Target:  5'- aGCUCCUUCCCacagCCCCCCgGCCa---- -3'
miRNA:   3'- aCGGGGAAGGG----GGGGGGgCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 33637 0.73 0.180131
Target:  5'- cGCCCCgcaCCCCgCCCCCGCgCGc--- -3'
miRNA:   3'- aCGGGGaa-GGGGgGGGGGCG-GCauau -5'
23834 5' -64.7 NC_005261.1 + 67745 0.72 0.189
Target:  5'- aGCUCgUccUCCUCCCCCUCGCCGUc-- -3'
miRNA:   3'- aCGGGgA--AGGGGGGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 14572 0.72 0.189
Target:  5'- gGCCcaugCCUUCCCCCCCCCCcCCc---- -3'
miRNA:   3'- aCGG----GGAAGGGGGGGGGGcGGcauau -5'
23834 5' -64.7 NC_005261.1 + 106337 0.72 0.193577
Target:  5'- gGCCCCgccgccgcgUCCgCCCCCgCCGCCGc--- -3'
miRNA:   3'- aCGGGGa--------AGGgGGGGG-GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 6831 0.72 0.203023
Target:  5'- cGCCCCcgCCCCCccccacccaCCCCCGCCc---- -3'
miRNA:   3'- aCGGGGaaGGGGG---------GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 114894 0.72 0.203023
Target:  5'- -cCCCCUUCCCCCCUgCUGCCc---- -3'
miRNA:   3'- acGGGGAAGGGGGGGgGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 11654 0.72 0.207895
Target:  5'- aGCCCCgccggagCCCCUgaaCCCCGCCGg--- -3'
miRNA:   3'- aCGGGGaa-----GGGGGg--GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 128717 0.72 0.207895
Target:  5'- cGCgCCCgggCCCCgCCCgCCCGCCGa--- -3'
miRNA:   3'- aCG-GGGaa-GGGG-GGG-GGGCGGCauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.