miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 37736 0.66 0.491855
Target:  5'- aGCCCCccgUCgCCCCCCgcgggCGCCGc--- -3'
miRNA:   3'- aCGGGGa--AGgGGGGGGg----GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 68193 0.75 0.124665
Target:  5'- gGCCCCcUCgCCCCCgCCGCCGg--- -3'
miRNA:   3'- aCGGGGaAGgGGGGGgGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 78773 0.83 0.03274
Target:  5'- uUGCCCCgcCCCCUCCCCCGCCGc--- -3'
miRNA:   3'- -ACGGGGaaGGGGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 82476 0.81 0.048442
Target:  5'- gGCCCCgUCCCCgUCCCCGCCGUc-- -3'
miRNA:   3'- aCGGGGaAGGGGgGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 6509 0.78 0.081146
Target:  5'- -cCCCUUUCCCCCCCUCCGCCu---- -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 13766 0.77 0.092167
Target:  5'- -cCCCCUUCCCCUUCCCCGCCc---- -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 14601 0.76 0.107266
Target:  5'- cGUCCCUcUCCCaCCCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGAaGGGG-GGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 109587 0.76 0.112797
Target:  5'- cGCCCCUgccuucccuucCCCCCCCCCCGCg----- -3'
miRNA:   3'- aCGGGGAa----------GGGGGGGGGGCGgcauau -5'
23834 5' -64.7 NC_005261.1 + 21923 0.76 0.115661
Target:  5'- cGCCCCccUUCCCCCCUCCGCCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 76349 0.75 0.121593
Target:  5'- cGCCCCcUCCCCUCCCCgCGCgCGcGUGc -3'
miRNA:   3'- aCGGGGaAGGGGGGGGG-GCG-GCaUAU- -5'
23834 5' -64.7 NC_005261.1 + 6681 0.75 0.123428
Target:  5'- cGCCCCcaggucuuucuucUCCUCCCCCCCGCCa---- -3'
miRNA:   3'- aCGGGGa------------AGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 11575 1.06 0.000679
Target:  5'- aUGCCCCUUCCCCCCCCCCGCCGUAUAc -3'
miRNA:   3'- -ACGGGGAAGGGGGGGGGGCGGCAUAU- -5'
23834 5' -64.7 NC_005261.1 + 9581 0.75 0.127808
Target:  5'- aGCCCCgcccacccagCCCCCaCCCCCGCCu---- -3'
miRNA:   3'- aCGGGGaa--------GGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 24078 0.75 0.134315
Target:  5'- gGCCCCgcccacccagCCCCCaCCCCCGCCu---- -3'
miRNA:   3'- aCGGGGaa--------GGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 137591 0.74 0.144649
Target:  5'- cGCCCC-UCCCCCaCCCCgCGCCc---- -3'
miRNA:   3'- aCGGGGaAGGGGG-GGGG-GCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 83987 0.74 0.148253
Target:  5'- -cCCCCUUUCCCCCUCCCGCgGc--- -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGCGgCauau -5'
23834 5' -64.7 NC_005261.1 + 35387 0.74 0.151937
Target:  5'- gGCCCCgaCCCCCgCCCCCGCg----- -3'
miRNA:   3'- aCGGGGaaGGGGG-GGGGGCGgcauau -5'
23834 5' -64.7 NC_005261.1 + 784 0.74 0.151937
Target:  5'- -uCCCCgcCCCCCCCCCgCGCCGc--- -3'
miRNA:   3'- acGGGGaaGGGGGGGGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 8313 0.74 0.155705
Target:  5'- cUGCCCCUcacccUCUCCUCCCCCgacccgcgcGCCGUGc- -3'
miRNA:   3'- -ACGGGGA-----AGGGGGGGGGG---------CGGCAUau -5'
23834 5' -64.7 NC_005261.1 + 35657 0.73 0.163494
Target:  5'- aGCCCCgcUCCCgCUCCCUGCCGg--- -3'
miRNA:   3'- aCGGGGa-AGGGgGGGGGGCGGCauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.