miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 119430 0.73 0.175836
Target:  5'- aGCUCCUUCCCacagCCCCCCgGCCa---- -3'
miRNA:   3'- aCGGGGAAGGG----GGGGGGgCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 33637 0.73 0.180131
Target:  5'- cGCCCCgcaCCCCgCCCCCGCgCGc--- -3'
miRNA:   3'- aCGGGGaa-GGGGgGGGGGCG-GCauau -5'
23834 5' -64.7 NC_005261.1 + 67745 0.72 0.189
Target:  5'- aGCUCgUccUCCUCCCCCUCGCCGUc-- -3'
miRNA:   3'- aCGGGgA--AGGGGGGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 14572 0.72 0.189
Target:  5'- gGCCcaugCCUUCCCCCCCCCCcCCc---- -3'
miRNA:   3'- aCGG----GGAAGGGGGGGGGGcGGcauau -5'
23834 5' -64.7 NC_005261.1 + 106337 0.72 0.193577
Target:  5'- gGCCCCgccgccgcgUCCgCCCCCgCCGCCGc--- -3'
miRNA:   3'- aCGGGGa--------AGGgGGGGG-GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 6831 0.72 0.203023
Target:  5'- cGCCCCcgCCCCCccccacccaCCCCCGCCc---- -3'
miRNA:   3'- aCGGGGaaGGGGG---------GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 114894 0.72 0.203023
Target:  5'- -cCCCCUUCCCCCCUgCUGCCc---- -3'
miRNA:   3'- acGGGGAAGGGGGGGgGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 11654 0.72 0.207895
Target:  5'- aGCCCCgccggagCCCCUgaaCCCCGCCGg--- -3'
miRNA:   3'- aCGGGGaa-----GGGGGg--GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 128717 0.72 0.207895
Target:  5'- cGCgCCCgggCCCCgCCCgCCCGCCGa--- -3'
miRNA:   3'- aCG-GGGaa-GGGG-GGG-GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 132454 0.72 0.207895
Target:  5'- gUGCCCCUcggCCgCCCUCCgCGCCGg--- -3'
miRNA:   3'- -ACGGGGAa--GGgGGGGGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 77826 0.72 0.212867
Target:  5'- cGCCCCagcaccaCCgCCCCCCUCGCCGc--- -3'
miRNA:   3'- aCGGGGaa-----GG-GGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 11145 0.72 0.212867
Target:  5'- cGCCgCUcUCCCCCUCCCCuccCCGUAUc -3'
miRNA:   3'- aCGGgGA-AGGGGGGGGGGc--GGCAUAu -5'
23834 5' -64.7 NC_005261.1 + 16356 0.72 0.217941
Target:  5'- gGCUCCgUCCUCUUCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGaAGGGGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 48628 0.72 0.217941
Target:  5'- aGCCCCacgCCCCgCCCCUgCGCCGg--- -3'
miRNA:   3'- aCGGGGaa-GGGG-GGGGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 32711 0.71 0.223118
Target:  5'- cGCCCCccgCCCCCCgCCC-CCGUc-- -3'
miRNA:   3'- aCGGGGaa-GGGGGGgGGGcGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 53338 0.71 0.228399
Target:  5'- cGCCUCUgCgCCCgCCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGAaGgGGG-GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 67779 0.71 0.228399
Target:  5'- cGCCCCcggccgCCCCCuCCUCCGCCu---- -3'
miRNA:   3'- aCGGGGaa----GGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 33187 0.71 0.233785
Target:  5'- cGCCCUg-CCCCCCgCCCGCCc---- -3'
miRNA:   3'- aCGGGGaaGGGGGGgGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 33273 0.71 0.233785
Target:  5'- gGCCCCcgUCCCCgUCCCgGuCCGUGg- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGgC-GGCAUau -5'
23834 5' -64.7 NC_005261.1 + 82425 0.71 0.239278
Target:  5'- gGCCCCgccgUCCgCgCCCCCgGCCGg--- -3'
miRNA:   3'- aCGGGGa---AGGgG-GGGGGgCGGCauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.