Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23834 | 5' | -64.7 | NC_005261.1 | + | 11575 | 1.06 | 0.000679 |
Target: 5'- aUGCCCCUUCCCCCCCCCCGCCGUAUAc -3' miRNA: 3'- -ACGGGGAAGGGGGGGGGGCGGCAUAU- -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 78773 | 0.83 | 0.03274 |
Target: 5'- uUGCCCCgcCCCCUCCCCCGCCGc--- -3' miRNA: 3'- -ACGGGGaaGGGGGGGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 82476 | 0.81 | 0.048442 |
Target: 5'- gGCCCCgUCCCCgUCCCCGCCGUc-- -3' miRNA: 3'- aCGGGGaAGGGGgGGGGGCGGCAuau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 6509 | 0.78 | 0.081146 |
Target: 5'- -cCCCUUUCCCCCCCUCCGCCu---- -3' miRNA: 3'- acGGGGAAGGGGGGGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 13766 | 0.77 | 0.092167 |
Target: 5'- -cCCCCUUCCCCUUCCCCGCCc---- -3' miRNA: 3'- acGGGGAAGGGGGGGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 14601 | 0.76 | 0.107266 |
Target: 5'- cGUCCCUcUCCCaCCCCCCGCCGc--- -3' miRNA: 3'- aCGGGGAaGGGG-GGGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 109587 | 0.76 | 0.112797 |
Target: 5'- cGCCCCUgccuucccuucCCCCCCCCCCGCg----- -3' miRNA: 3'- aCGGGGAa----------GGGGGGGGGGCGgcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 21923 | 0.76 | 0.115661 |
Target: 5'- cGCCCCccUUCCCCCCUCCGCCc---- -3' miRNA: 3'- aCGGGGa-AGGGGGGGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 76349 | 0.75 | 0.121593 |
Target: 5'- cGCCCCcUCCCCUCCCCgCGCgCGcGUGc -3' miRNA: 3'- aCGGGGaAGGGGGGGGG-GCG-GCaUAU- -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 6681 | 0.75 | 0.123428 |
Target: 5'- cGCCCCcaggucuuucuucUCCUCCCCCCCGCCa---- -3' miRNA: 3'- aCGGGGa------------AGGGGGGGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 68193 | 0.75 | 0.124665 |
Target: 5'- gGCCCCcUCgCCCCCgCCGCCGg--- -3' miRNA: 3'- aCGGGGaAGgGGGGGgGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 9581 | 0.75 | 0.127808 |
Target: 5'- aGCCCCgcccacccagCCCCCaCCCCCGCCu---- -3' miRNA: 3'- aCGGGGaa--------GGGGG-GGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 24078 | 0.75 | 0.134315 |
Target: 5'- gGCCCCgcccacccagCCCCCaCCCCCGCCu---- -3' miRNA: 3'- aCGGGGaa--------GGGGG-GGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 137591 | 0.74 | 0.144649 |
Target: 5'- cGCCCC-UCCCCCaCCCCgCGCCc---- -3' miRNA: 3'- aCGGGGaAGGGGG-GGGG-GCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 83987 | 0.74 | 0.148253 |
Target: 5'- -cCCCCUUUCCCCCUCCCGCgGc--- -3' miRNA: 3'- acGGGGAAGGGGGGGGGGCGgCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 35387 | 0.74 | 0.151937 |
Target: 5'- gGCCCCgaCCCCCgCCCCCGCg----- -3' miRNA: 3'- aCGGGGaaGGGGG-GGGGGCGgcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 784 | 0.74 | 0.151937 |
Target: 5'- -uCCCCgcCCCCCCCCCgCGCCGc--- -3' miRNA: 3'- acGGGGaaGGGGGGGGG-GCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 8313 | 0.74 | 0.155705 |
Target: 5'- cUGCCCCUcacccUCUCCUCCCCCgacccgcgcGCCGUGc- -3' miRNA: 3'- -ACGGGGA-----AGGGGGGGGGG---------CGGCAUau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 35657 | 0.73 | 0.163494 |
Target: 5'- aGCCCCgcUCCCgCUCCCUGCCGg--- -3' miRNA: 3'- aCGGGGa-AGGGgGGGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 78114 | 0.73 | 0.167519 |
Target: 5'- gGCCCCggCCCCaccgcucgccaCCCCCGCCGc--- -3' miRNA: 3'- aCGGGGaaGGGGg----------GGGGGCGGCauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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