Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23834 | 5' | -64.7 | NC_005261.1 | + | 22345 | 0.66 | 0.455841 |
Target: 5'- -cUCCCUccauucauUUCCCCCCCCCGUCu---- -3' miRNA: 3'- acGGGGA--------AGGGGGGGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 52036 | 0.66 | 0.491855 |
Target: 5'- gGCCaacgCCCgCCCCgCCCGCCGc--- -3' miRNA: 3'- aCGGggaaGGG-GGGG-GGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 37702 | 0.66 | 0.455841 |
Target: 5'- gGCgCCUUCgUCCCCCaagcccucggCCCGCCGg--- -3' miRNA: 3'- aCGgGGAAG-GGGGGG----------GGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 76972 | 0.66 | 0.491855 |
Target: 5'- aGCCUgUguggCCCCCUUCCGCCGg--- -3' miRNA: 3'- aCGGGgAag--GGGGGGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 127247 | 0.66 | 0.473676 |
Target: 5'- aGCCU--UCCCCCCCCUCcagcgcuacgGCCGg--- -3' miRNA: 3'- aCGGGgaAGGGGGGGGGG----------CGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 26535 | 0.66 | 0.464714 |
Target: 5'- -cCCCCcUCCCCCCuuCUCCGCCu---- -3' miRNA: 3'- acGGGGaAGGGGGG--GGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 10076 | 0.66 | 0.491855 |
Target: 5'- -cUCCCUUCCagccgCCCgaCCCCCGCCGc--- -3' miRNA: 3'- acGGGGAAGG-----GGG--GGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 9000 | 0.66 | 0.464714 |
Target: 5'- aGCCCC-UCCCaCauaCCCUGCCGg--- -3' miRNA: 3'- aCGGGGaAGGG-Ggg-GGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 37736 | 0.66 | 0.491855 |
Target: 5'- aGCCCCccgUCgCCCCCCgcgggCGCCGc--- -3' miRNA: 3'- aCGGGGa--AGgGGGGGGg----GCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 7727 | 0.66 | 0.473676 |
Target: 5'- gGCCCCaccccucaucguUUCCCgCUCCaCCCugcgguccgGCCGUGUGa -3' miRNA: 3'- aCGGGG------------AAGGG-GGGG-GGG---------CGGCAUAU- -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 124887 | 0.66 | 0.473676 |
Target: 5'- gGCCCgggUUCCUggCCgCCCCCGCCGc--- -3' miRNA: 3'- aCGGGg--AAGGG--GG-GGGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 127281 | 0.66 | 0.455841 |
Target: 5'- cGCCCg--CCgcgggggcagCCCUCCCCGCCGgcUGg -3' miRNA: 3'- aCGGGgaaGG----------GGGGGGGGCGGCauAU- -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 9707 | 0.66 | 0.473676 |
Target: 5'- cGCCCCcUCCCCUagcagcagcgCUCCGCCGc--- -3' miRNA: 3'- aCGGGGaAGGGGGg---------GGGGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 119735 | 0.66 | 0.44706 |
Target: 5'- -aCCCCUUCCCgCgCgCCCCGCCc---- -3' miRNA: 3'- acGGGGAAGGGgG-G-GGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 72659 | 0.66 | 0.455841 |
Target: 5'- cGCCUCgggCCCCCCCggcgucaucuCCCGCgCGa--- -3' miRNA: 3'- aCGGGGaa-GGGGGGG----------GGGCG-GCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 22225 | 0.66 | 0.44706 |
Target: 5'- aGCCUCgagccggcaCCCCCgCCCCGCCc---- -3' miRNA: 3'- aCGGGGaa-------GGGGGgGGGGCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 87993 | 0.66 | 0.491855 |
Target: 5'- cGCgCCggCUCCUCCCCCGgCGg--- -3' miRNA: 3'- aCGgGGaaGGGGGGGGGGCgGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 36694 | 0.66 | 0.455841 |
Target: 5'- aGUCCCUcggCCCCCCgCgcugaCCGCCGg--- -3' miRNA: 3'- aCGGGGAa--GGGGGG-Gg----GGCGGCauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 21335 | 0.66 | 0.473676 |
Target: 5'- aGCCCCUgcuggugaaggUCCCCgCCCCUgGCUu---- -3' miRNA: 3'- aCGGGGA-----------AGGGG-GGGGGgCGGcauau -5' |
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23834 | 5' | -64.7 | NC_005261.1 | + | 6380 | 0.67 | 0.438374 |
Target: 5'- -cCCCCUUUCCCCCgUUCCGCCc---- -3' miRNA: 3'- acGGGGAAGGGGGG-GGGGCGGcauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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