miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 100 0.7 0.287161
Target:  5'- cGCCCCcgggCCCCgCCgCCCgCGCCGg--- -3'
miRNA:   3'- aCGGGGaa--GGGG-GG-GGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 582 0.69 0.327811
Target:  5'- cGCUCCUcCCCCCuCCCCCuCUGUu-- -3'
miRNA:   3'- aCGGGGAaGGGGG-GGGGGcGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 705 0.71 0.244878
Target:  5'- cGCCCCccUCCCCCCUUCC-CCGg--- -3'
miRNA:   3'- aCGGGGa-AGGGGGGGGGGcGGCauau -5'
23834 5' -64.7 NC_005261.1 + 784 0.74 0.151937
Target:  5'- -uCCCCgcCCCCCCCCCgCGCCGc--- -3'
miRNA:   3'- acGGGGaaGGGGGGGGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 820 0.68 0.388378
Target:  5'- cGCCCCUUCCCUCCCgauggagagaaCCCcCCa---- -3'
miRNA:   3'- aCGGGGAAGGGGGGG-----------GGGcGGcauau -5'
23834 5' -64.7 NC_005261.1 + 2895 0.67 0.421296
Target:  5'- gGCCCCgUCCCcgggCCCCCCCaGCUc---- -3'
miRNA:   3'- aCGGGGaAGGG----GGGGGGG-CGGcauau -5'
23834 5' -64.7 NC_005261.1 + 3034 0.67 0.438374
Target:  5'- cGUCCCcgUCCCCgUCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 3058 0.67 0.438374
Target:  5'- cGUCCCcgUCCCCgUCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 3082 0.67 0.438374
Target:  5'- cGUCCCcgUCCCCgUCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 3106 0.67 0.438374
Target:  5'- cGUCCCcgUCCCCgUCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 3136 0.69 0.300254
Target:  5'- cGUCCCcgUCCCCgUCCCCGuCCGa--- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGC-GGCauau -5'
23834 5' -64.7 NC_005261.1 + 3208 0.68 0.380416
Target:  5'- -cCUCCUccUCCUCCCCCUCGCUGg--- -3'
miRNA:   3'- acGGGGA--AGGGGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 3239 0.68 0.342275
Target:  5'- gGCCCCggccUCCUcguCCCCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa---AGGG---GGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 5035 0.67 0.412909
Target:  5'- -uCCUCUuccUCCUCCCCCUCGUCGUc-- -3'
miRNA:   3'- acGGGGA---AGGGGGGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 5684 0.7 0.262332
Target:  5'- aGCuCCCUccccUCCCucuCCUCCCCGCCGg--- -3'
miRNA:   3'- aCG-GGGA----AGGG---GGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 6380 0.67 0.438374
Target:  5'- -cCCCCUUUCCCCCgUUCCGCCc---- -3'
miRNA:   3'- acGGGGAAGGGGGG-GGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 6509 0.78 0.081146
Target:  5'- -cCCCUUUCCCCCCCUCCGCCu---- -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 6681 0.75 0.123428
Target:  5'- cGCCCCcaggucuuucuucUCCUCCCCCCCGCCa---- -3'
miRNA:   3'- aCGGGGa------------AGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 6831 0.72 0.203023
Target:  5'- cGCCCCcgCCCCCccccacccaCCCCCGCCc---- -3'
miRNA:   3'- aCGGGGaaGGGGG---------GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 7003 0.68 0.364823
Target:  5'- -uCCCCacCCCCCCCCCCGagggaGUGg- -3'
miRNA:   3'- acGGGGaaGGGGGGGGGGCgg---CAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.