miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 137783 0.7 0.287161
Target:  5'- cGCCCCcgggCCCCgCCgCCCgCGCCGg--- -3'
miRNA:   3'- aCGGGGaa--GGGG-GG-GGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 137591 0.74 0.144649
Target:  5'- cGCCCC-UCCCCCaCCCCgCGCCc---- -3'
miRNA:   3'- aCGGGGaAGGGGG-GGGG-GCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 134866 0.69 0.327811
Target:  5'- gGCgCCCgcgCCCCCgcgggCCCCUGCUGUGc- -3'
miRNA:   3'- aCG-GGGaa-GGGGG-----GGGGGCGGCAUau -5'
23834 5' -64.7 NC_005261.1 + 132454 0.72 0.207895
Target:  5'- gUGCCCCUcggCCgCCCUCCgCGCCGg--- -3'
miRNA:   3'- -ACGGGGAa--GGgGGGGGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 131402 0.69 0.327811
Target:  5'- cGCCaCCgagCCCCCCgCCgCUGCCGg--- -3'
miRNA:   3'- aCGG-GGaa-GGGGGG-GG-GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 129281 0.68 0.342275
Target:  5'- aGCCCCcgcgCCgCCCCgCCCGCCc---- -3'
miRNA:   3'- aCGGGGaa--GGgGGGG-GGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 128717 0.72 0.207895
Target:  5'- cGCgCCCgggCCCCgCCCgCCCGCCGa--- -3'
miRNA:   3'- aCG-GGGaa-GGGG-GGG-GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 127281 0.66 0.455841
Target:  5'- cGCCCg--CCgcgggggcagCCCUCCCCGCCGgcUGg -3'
miRNA:   3'- aCGGGgaaGG----------GGGGGGGGCGGCauAU- -5'
23834 5' -64.7 NC_005261.1 + 127247 0.66 0.473676
Target:  5'- aGCCU--UCCCCCCCCUCcagcgcuacgGCCGg--- -3'
miRNA:   3'- aCGGGgaAGGGGGGGGGG----------CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 124887 0.66 0.473676
Target:  5'- gGCCCgggUUCCUggCCgCCCCCGCCGc--- -3'
miRNA:   3'- aCGGGg--AAGGG--GG-GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 119814 0.68 0.388378
Target:  5'- gGCaacuacaUCUUCCCCUCgCCCGCCGa--- -3'
miRNA:   3'- aCGg------GGAAGGGGGGgGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 119735 0.66 0.44706
Target:  5'- -aCCCCUUCCCgCgCgCCCCGCCc---- -3'
miRNA:   3'- acGGGGAAGGGgG-G-GGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 119525 0.69 0.334986
Target:  5'- gGCCCCggUCCCCgCggccgagcaaggCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGa-AGGGGgG------------GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 119430 0.73 0.175836
Target:  5'- aGCUCCUUCCCacagCCCCCCgGCCa---- -3'
miRNA:   3'- aCGGGGAAGGG----GGGGGGgCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 119321 0.68 0.372564
Target:  5'- cGCCCUcgCCCUUgCCCCCGCCu---- -3'
miRNA:   3'- aCGGGGaaGGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 117646 0.68 0.372564
Target:  5'- cGCgCCgcgCCCCCCcgcuaagcgCCCCGCCGc--- -3'
miRNA:   3'- aCGgGGaa-GGGGGG---------GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 116614 0.67 0.438374
Target:  5'- aGCCCUcgCaCCgCCCgCCCGCCGa--- -3'
miRNA:   3'- aCGGGGaaG-GGgGGG-GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 115887 0.7 0.268371
Target:  5'- -cUCCCUcgccgCCUCCUCCCCGCCGUc-- -3'
miRNA:   3'- acGGGGAa----GGGGGGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 114894 0.72 0.203023
Target:  5'- -cCCCCUUCCCCCCUgCUGCCc---- -3'
miRNA:   3'- acGGGGAAGGGGGGGgGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 109587 0.76 0.112797
Target:  5'- cGCCCCUgccuucccuucCCCCCCCCCCGCg----- -3'
miRNA:   3'- aCGGGGAa----------GGGGGGGGGGCGgcauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.