miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 7727 0.66 0.473676
Target:  5'- gGCCCCaccccucaucguUUCCCgCUCCaCCCugcgguccgGCCGUGUGa -3'
miRNA:   3'- aCGGGG------------AAGGG-GGGG-GGG---------CGGCAUAU- -5'
23834 5' -64.7 NC_005261.1 + 8313 0.74 0.155705
Target:  5'- cUGCCCCUcacccUCUCCUCCCCCgacccgcgcGCCGUGc- -3'
miRNA:   3'- -ACGGGGA-----AGGGGGGGGGG---------CGGCAUau -5'
23834 5' -64.7 NC_005261.1 + 9000 0.66 0.464714
Target:  5'- aGCCCC-UCCCaCauaCCCUGCCGg--- -3'
miRNA:   3'- aCGGGGaAGGG-Ggg-GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 9316 0.68 0.349678
Target:  5'- aGCCCCcaggaCCgCCCCgCCGCCGa--- -3'
miRNA:   3'- aCGGGGaa---GGgGGGGgGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 9581 0.75 0.127808
Target:  5'- aGCCCCgcccacccagCCCCCaCCCCCGCCu---- -3'
miRNA:   3'- aCGGGGaa--------GGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 9707 0.66 0.473676
Target:  5'- cGCCCCcUCCCCUagcagcagcgCUCCGCCGc--- -3'
miRNA:   3'- aCGGGGaAGGGGGg---------GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 10076 0.66 0.491855
Target:  5'- -cUCCCUUCCagccgCCCgaCCCCCGCCGc--- -3'
miRNA:   3'- acGGGGAAGG-----GGG--GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 10716 0.67 0.438374
Target:  5'- cGCCuCCgggCCCCCcucuuCCUCCGCCGc--- -3'
miRNA:   3'- aCGG-GGaa-GGGGG-----GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 11145 0.72 0.212867
Target:  5'- cGCCgCUcUCCCCCUCCCCuccCCGUAUc -3'
miRNA:   3'- aCGGgGA-AGGGGGGGGGGc--GGCAUAu -5'
23834 5' -64.7 NC_005261.1 + 11575 1.06 0.000679
Target:  5'- aUGCCCCUUCCCCCCCCCCGCCGUAUAc -3'
miRNA:   3'- -ACGGGGAAGGGGGGGGGGCGGCAUAU- -5'
23834 5' -64.7 NC_005261.1 + 11654 0.72 0.207895
Target:  5'- aGCCCCgccggagCCCCUgaaCCCCGCCGg--- -3'
miRNA:   3'- aCGGGGaa-----GGGGGg--GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 13766 0.77 0.092167
Target:  5'- -cCCCCUUCCCCUUCCCCGCCc---- -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 14572 0.72 0.189
Target:  5'- gGCCcaugCCUUCCCCCCCCCCcCCc---- -3'
miRNA:   3'- aCGG----GGAAGGGGGGGGGGcGGcauau -5'
23834 5' -64.7 NC_005261.1 + 14601 0.76 0.107266
Target:  5'- cGUCCCUcUCCCaCCCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGAaGGGG-GGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 16322 0.71 0.244878
Target:  5'- gGCCC--UCCCCCUCgCCGCCGg--- -3'
miRNA:   3'- aCGGGgaAGGGGGGGgGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 16356 0.72 0.217941
Target:  5'- gGCUCCgUCCUCUUCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGaAGGGGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 17335 0.67 0.429785
Target:  5'- gGCCCag-CUCCCgCCCCGCCc---- -3'
miRNA:   3'- aCGGGgaaGGGGGgGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 21335 0.66 0.473676
Target:  5'- aGCCCCUgcuggugaaggUCCCCgCCCCUgGCUu---- -3'
miRNA:   3'- aCGGGGA-----------AGGGG-GGGGGgCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 21923 0.76 0.115661
Target:  5'- cGCCCCccUUCCCCCCUCCGCCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 22225 0.66 0.44706
Target:  5'- aGCCUCgagccggcaCCCCCgCCCCGCCc---- -3'
miRNA:   3'- aCGGGGaa-------GGGGGgGGGGCGGcauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.