miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 6380 0.67 0.438374
Target:  5'- -cCCCCUUUCCCCCgUUCCGCCc---- -3'
miRNA:   3'- acGGGGAAGGGGGG-GGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 116614 0.67 0.438374
Target:  5'- aGCCCUcgCaCCgCCCgCCCGCCGa--- -3'
miRNA:   3'- aCGGGGaaG-GGgGGG-GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 3082 0.67 0.438374
Target:  5'- cGUCCCcgUCCCCgUCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 3106 0.67 0.438374
Target:  5'- cGUCCCcgUCCCCgUCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 10716 0.67 0.438374
Target:  5'- cGCCuCCgggCCCCCcucuuCCUCCGCCGc--- -3'
miRNA:   3'- aCGG-GGaa-GGGGG-----GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 3058 0.67 0.438374
Target:  5'- cGUCCCcgUCCCCgUCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 79011 0.67 0.438374
Target:  5'- -aCUCCUccUCCCCCUCCUCGCCc---- -3'
miRNA:   3'- acGGGGA--AGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 17335 0.67 0.429785
Target:  5'- gGCCCag-CUCCCgCCCCGCCc---- -3'
miRNA:   3'- aCGGGgaaGGGGGgGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 106742 0.67 0.421296
Target:  5'- aGCCCCggcgCCUCCgCgCCCGCCa---- -3'
miRNA:   3'- aCGGGGaa--GGGGGgG-GGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 31094 0.67 0.421296
Target:  5'- gGCCCCaugCCgCCCggcggCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGaa-GGgGGG-----GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 103565 0.67 0.421296
Target:  5'- gGCCCCgugCCgCCgCCgCCCgCGCCGUc-- -3'
miRNA:   3'- aCGGGGaa-GG-GG-GG-GGG-GCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 2895 0.67 0.421296
Target:  5'- gGCCCCgUCCCcgggCCCCCCCaGCUc---- -3'
miRNA:   3'- aCGGGGaAGGG----GGGGGGG-CGGcauau -5'
23834 5' -64.7 NC_005261.1 + 28140 0.67 0.412909
Target:  5'- cGCCCUcggcgCCCCCaUCUCCGCCGc--- -3'
miRNA:   3'- aCGGGGaa---GGGGG-GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 5035 0.67 0.412909
Target:  5'- -uCCUCUuccUCCUCCCCCUCGUCGUc-- -3'
miRNA:   3'- acGGGGA---AGGGGGGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 77491 0.67 0.404626
Target:  5'- cGCCCCguacUUCCUgCCgCCCGCCa---- -3'
miRNA:   3'- aCGGGG----AAGGGgGGgGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 25719 0.68 0.388378
Target:  5'- aGCCCCccUCUCCCCCCUCucccaccggGCCGc--- -3'
miRNA:   3'- aCGGGGa-AGGGGGGGGGG---------CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 119814 0.68 0.388378
Target:  5'- gGCaacuacaUCUUCCCCUCgCCCGCCGa--- -3'
miRNA:   3'- aCGg------GGAAGGGGGGgGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 820 0.68 0.388378
Target:  5'- cGCCCCUUCCCUCCCgauggagagaaCCCcCCa---- -3'
miRNA:   3'- aCGGGGAAGGGGGGG-----------GGGcGGcauau -5'
23834 5' -64.7 NC_005261.1 + 3208 0.68 0.380416
Target:  5'- -cCUCCUccUCCUCCCCCUCGCUGg--- -3'
miRNA:   3'- acGGGGA--AGGGGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 109543 0.68 0.379626
Target:  5'- gGCCCCcucgCCacaaccgccgcggCCCCCCUCGCCGc--- -3'
miRNA:   3'- aCGGGGaa--GG-------------GGGGGGGGCGGCauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.