miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 119321 0.68 0.372564
Target:  5'- cGCCCUcgCCCUUgCCCCCGCCu---- -3'
miRNA:   3'- aCGGGGaaGGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 117646 0.68 0.372564
Target:  5'- cGCgCCgcgCCCCCCcgcuaagcgCCCCGCCGc--- -3'
miRNA:   3'- aCGgGGaa-GGGGGG---------GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 7003 0.68 0.364823
Target:  5'- -uCCCCacCCCCCCCCCCGagggaGUGg- -3'
miRNA:   3'- acGGGGaaGGGGGGGGGGCgg---CAUau -5'
23834 5' -64.7 NC_005261.1 + 94432 0.68 0.349678
Target:  5'- gGCgCCgcCCCCCUCCCCGuCCGc--- -3'
miRNA:   3'- aCGgGGaaGGGGGGGGGGC-GGCauau -5'
23834 5' -64.7 NC_005261.1 + 9316 0.68 0.349678
Target:  5'- aGCCCCcaggaCCgCCCCgCCGCCGa--- -3'
miRNA:   3'- aCGGGGaa---GGgGGGGgGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 49986 0.68 0.349678
Target:  5'- cGCCgCCgucgUCCCCCCCgagCCgCGCCGc--- -3'
miRNA:   3'- aCGG-GGa---AGGGGGGG---GG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 27120 0.68 0.349678
Target:  5'- aUGCCagaCCUcCCCCauuCCCCCCGCCa---- -3'
miRNA:   3'- -ACGG---GGAaGGGG---GGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 59152 0.68 0.346703
Target:  5'- cGCCCCgggcgcgcggcgCCCgCCCCagCCCGCCGa--- -3'
miRNA:   3'- aCGGGGaa----------GGG-GGGG--GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 39578 0.68 0.342275
Target:  5'- -cCCCCUcUCCCUCCCCagCGCCGa--- -3'
miRNA:   3'- acGGGGA-AGGGGGGGGg-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 129281 0.68 0.342275
Target:  5'- aGCCCCcgcgCCgCCCCgCCCGCCc---- -3'
miRNA:   3'- aCGGGGaa--GGgGGGG-GGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 24868 0.68 0.342275
Target:  5'- gGCCCCUcccacggccugUCCCCgCCCCCUuGCCc---- -3'
miRNA:   3'- aCGGGGA-----------AGGGG-GGGGGG-CGGcauau -5'
23834 5' -64.7 NC_005261.1 + 3239 0.68 0.342275
Target:  5'- gGCCCCggccUCCUcguCCCCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa---AGGG---GGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 119525 0.69 0.334986
Target:  5'- gGCCCCggUCCCCgCggccgagcaaggCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGa-AGGGGgG------------GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 61630 0.69 0.327811
Target:  5'- cGCCCCgcuggCCgCCCgUCCGCCGg--- -3'
miRNA:   3'- aCGGGGaa---GGgGGGgGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 582 0.69 0.327811
Target:  5'- cGCUCCUcCCCCCuCCCCCuCUGUu-- -3'
miRNA:   3'- aCGGGGAaGGGGG-GGGGGcGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 134866 0.69 0.327811
Target:  5'- gGCgCCCgcgCCCCCgcgggCCCCUGCUGUGc- -3'
miRNA:   3'- aCG-GGGaa-GGGGG-----GGGGGCGGCAUau -5'
23834 5' -64.7 NC_005261.1 + 131402 0.69 0.327811
Target:  5'- cGCCaCCgagCCCCCCgCCgCUGCCGg--- -3'
miRNA:   3'- aCGG-GGaa-GGGGGG-GG-GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 30914 0.69 0.32075
Target:  5'- cGCCCgg-CCCCUCCCggCCGCCGg--- -3'
miRNA:   3'- aCGGGgaaGGGGGGGG--GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 102896 0.69 0.32075
Target:  5'- aGCCCCgcgCCCCUggcccgcagcgCCUCCGCCGc--- -3'
miRNA:   3'- aCGGGGaa-GGGGG-----------GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 67267 0.69 0.32075
Target:  5'- cGCCgCCagCCCggccagcagcagCCCCCCCGCCGc--- -3'
miRNA:   3'- aCGG-GGaaGGG------------GGGGGGGCGGCauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.