miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 24252 0.69 0.313803
Target:  5'- aGCCCCU--CCCCCCUCUGCgGg--- -3'
miRNA:   3'- aCGGGGAagGGGGGGGGGCGgCauau -5'
23834 5' -64.7 NC_005261.1 + 91899 0.69 0.313803
Target:  5'- cUGCCCCcgCCCCCgUCCCGgCGc--- -3'
miRNA:   3'- -ACGGGGaaGGGGGgGGGGCgGCauau -5'
23834 5' -64.7 NC_005261.1 + 77518 0.69 0.300254
Target:  5'- cGCCgCCgcgCCCCCgCCCCCgauGCCGg--- -3'
miRNA:   3'- aCGG-GGaa-GGGGG-GGGGG---CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 3136 0.69 0.300254
Target:  5'- cGUCCCcgUCCCCgUCCCCGuCCGa--- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGC-GGCauau -5'
23834 5' -64.7 NC_005261.1 + 26421 0.69 0.300254
Target:  5'- -cCCCCUUCUCUCCCUCUGCCcUGUc -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGCGGcAUAu -5'
23834 5' -64.7 NC_005261.1 + 82533 0.7 0.293651
Target:  5'- gGCCCCauccucgCCCCCCuCCUCGCCc---- -3'
miRNA:   3'- aCGGGGaa-----GGGGGG-GGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 100 0.7 0.287161
Target:  5'- cGCCCCcgggCCCCgCCgCCCgCGCCGg--- -3'
miRNA:   3'- aCGGGGaa--GGGG-GG-GGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 137783 0.7 0.287161
Target:  5'- cGCCCCcgggCCCCgCCgCCCgCGCCGg--- -3'
miRNA:   3'- aCGGGGaa--GGGG-GG-GGG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 115887 0.7 0.268371
Target:  5'- -cUCCCUcgccgCCUCCUCCCCGCCGUc-- -3'
miRNA:   3'- acGGGGAa----GGGGGGGGGGCGGCAuau -5'
23834 5' -64.7 NC_005261.1 + 5684 0.7 0.262332
Target:  5'- aGCuCCCUccccUCCCucuCCUCCCCGCCGg--- -3'
miRNA:   3'- aCG-GGGA----AGGG---GGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 28073 0.7 0.256404
Target:  5'- uUGCCCg--CCCCCCCCCCuacucgucgcGCCGc--- -3'
miRNA:   3'- -ACGGGgaaGGGGGGGGGG----------CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 93706 0.7 0.256404
Target:  5'- gUGCCUCUUCCUCCUCgUCGUCGUcgGc -3'
miRNA:   3'- -ACGGGGAAGGGGGGGgGGCGGCAuaU- -5'
23834 5' -64.7 NC_005261.1 + 105053 0.7 0.256404
Target:  5'- cGCCCCUccccagCCCUCCCCggcaggguCCGCCGa--- -3'
miRNA:   3'- aCGGGGAa-----GGGGGGGG--------GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 67922 0.71 0.250586
Target:  5'- gGCCCUUUUgCgucauuguCCCCCCCGCCGg--- -3'
miRNA:   3'- aCGGGGAAGgG--------GGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 22279 0.71 0.250586
Target:  5'- -cCCUCUUCCgccgCCCCCCCCGCCc---- -3'
miRNA:   3'- acGGGGAAGG----GGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 52097 0.71 0.250586
Target:  5'- -cCCCCUUCCCCCCCUCUcCUGcGUGa -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGcGGCaUAU- -5'
23834 5' -64.7 NC_005261.1 + 16322 0.71 0.244878
Target:  5'- gGCCC--UCCCCCUCgCCGCCGg--- -3'
miRNA:   3'- aCGGGgaAGGGGGGGgGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 705 0.71 0.244878
Target:  5'- cGCCCCccUCCCCCCUUCC-CCGg--- -3'
miRNA:   3'- aCGGGGa-AGGGGGGGGGGcGGCauau -5'
23834 5' -64.7 NC_005261.1 + 61687 0.71 0.244878
Target:  5'- cGCCCCgacccucacUCCCCaUCCgCCCGcCCGUGUGc -3'
miRNA:   3'- aCGGGGa--------AGGGG-GGG-GGGC-GGCAUAU- -5'
23834 5' -64.7 NC_005261.1 + 89430 0.71 0.244878
Target:  5'- gGCCgCCgggcUCCCCgCgCCCGCCGUGc- -3'
miRNA:   3'- aCGG-GGa---AGGGGgGgGGGCGGCAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.