miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 59152 0.68 0.346703
Target:  5'- cGCCCCgggcgcgcggcgCCCgCCCCagCCCGCCGa--- -3'
miRNA:   3'- aCGGGGaa----------GGG-GGGG--GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 9316 0.68 0.349678
Target:  5'- aGCCCCcaggaCCgCCCCgCCGCCGa--- -3'
miRNA:   3'- aCGGGGaa---GGgGGGGgGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 7003 0.68 0.364823
Target:  5'- -uCCCCacCCCCCCCCCCGagggaGUGg- -3'
miRNA:   3'- acGGGGaaGGGGGGGGGGCgg---CAUau -5'
23834 5' -64.7 NC_005261.1 + 117646 0.68 0.372564
Target:  5'- cGCgCCgcgCCCCCCcgcuaagcgCCCCGCCGc--- -3'
miRNA:   3'- aCGgGGaa-GGGGGG---------GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 49986 0.68 0.349678
Target:  5'- cGCCgCCgucgUCCCCCCCgagCCgCGCCGc--- -3'
miRNA:   3'- aCGG-GGa---AGGGGGGG---GG-GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 27120 0.68 0.349678
Target:  5'- aUGCCagaCCUcCCCCauuCCCCCCGCCa---- -3'
miRNA:   3'- -ACGG---GGAaGGGG---GGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 119321 0.68 0.372564
Target:  5'- cGCCCUcgCCCUUgCCCCCGCCu---- -3'
miRNA:   3'- aCGGGGaaGGGGG-GGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 109543 0.68 0.379626
Target:  5'- gGCCCCcucgCCacaaccgccgcggCCCCCCUCGCCGc--- -3'
miRNA:   3'- aCGGGGaa--GG-------------GGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 3208 0.68 0.380416
Target:  5'- -cCUCCUccUCCUCCCCCUCGCUGg--- -3'
miRNA:   3'- acGGGGA--AGGGGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 119814 0.68 0.388378
Target:  5'- gGCaacuacaUCUUCCCCUCgCCCGCCGa--- -3'
miRNA:   3'- aCGg------GGAAGGGGGGgGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 820 0.68 0.388378
Target:  5'- cGCCCCUUCCCUCCCgauggagagaaCCCcCCa---- -3'
miRNA:   3'- aCGGGGAAGGGGGGG-----------GGGcGGcauau -5'
23834 5' -64.7 NC_005261.1 + 25719 0.68 0.388378
Target:  5'- aGCCCCccUCUCCCCCCUCucccaccggGCCGc--- -3'
miRNA:   3'- aCGGGGa-AGGGGGGGGGG---------CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 30914 0.69 0.32075
Target:  5'- cGCCCgg-CCCCUCCCggCCGCCGg--- -3'
miRNA:   3'- aCGGGgaaGGGGGGGG--GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 24252 0.69 0.313803
Target:  5'- aGCCCCU--CCCCCCUCUGCgGg--- -3'
miRNA:   3'- aCGGGGAagGGGGGGGGGCGgCauau -5'
23834 5' -64.7 NC_005261.1 + 91899 0.69 0.313803
Target:  5'- cUGCCCCcgCCCCCgUCCCGgCGc--- -3'
miRNA:   3'- -ACGGGGaaGGGGGgGGGGCgGCauau -5'
23834 5' -64.7 NC_005261.1 + 26421 0.69 0.300254
Target:  5'- -cCCCCUUCUCUCCCUCUGCCcUGUc -3'
miRNA:   3'- acGGGGAAGGGGGGGGGGCGGcAUAu -5'
23834 5' -64.7 NC_005261.1 + 3136 0.69 0.300254
Target:  5'- cGUCCCcgUCCCCgUCCCCGuCCGa--- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGC-GGCauau -5'
23834 5' -64.7 NC_005261.1 + 77518 0.69 0.300254
Target:  5'- cGCCgCCgcgCCCCCgCCCCCgauGCCGg--- -3'
miRNA:   3'- aCGG-GGaa-GGGGG-GGGGG---CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 61630 0.69 0.327811
Target:  5'- cGCCCCgcuggCCgCCCgUCCGCCGg--- -3'
miRNA:   3'- aCGGGGaa---GGgGGGgGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 119525 0.69 0.334986
Target:  5'- gGCCCCggUCCCCgCggccgagcaaggCCCCGCCGc--- -3'
miRNA:   3'- aCGGGGa-AGGGGgG------------GGGGCGGCauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.