miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23836 5' -53 NC_005261.1 + 70647 0.66 0.957102
Target:  5'- -gCGGCgcugAGGUUcGgcGCCG-CGGCCGCg -3'
miRNA:   3'- aaGUCG----UCCAA-CauCGGCaGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 66027 0.66 0.957102
Target:  5'- -cCGGCGcGUcGUAGUCGgCGGCCACg -3'
miRNA:   3'- aaGUCGUcCAaCAUCGGCaGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 627 0.66 0.957102
Target:  5'- ---cGCAGGggaUGUGGCgG-CGGCCGCc -3'
miRNA:   3'- aaguCGUCCa--ACAUCGgCaGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 33941 0.66 0.957102
Target:  5'- -cCAGCAGGaUGgcGCCGcCugUCGCu -3'
miRNA:   3'- aaGUCGUCCaACauCGGCaGuuGGUG- -5'
23836 5' -53 NC_005261.1 + 136808 0.66 0.957102
Target:  5'- --uGGCGGGcucGUAGCCGUaGACgGCg -3'
miRNA:   3'- aagUCGUCCaa-CAUCGGCAgUUGgUG- -5'
23836 5' -53 NC_005261.1 + 121770 0.66 0.953033
Target:  5'- --gAGCGcGGUgggGUGGCCG-CGGCCGg -3'
miRNA:   3'- aagUCGU-CCAa--CAUCGGCaGUUGGUg -5'
23836 5' -53 NC_005261.1 + 96956 0.66 0.953033
Target:  5'- aUCGGCGGGgc--AGCCGcCGGgCGCg -3'
miRNA:   3'- aAGUCGUCCaacaUCGGCaGUUgGUG- -5'
23836 5' -53 NC_005261.1 + 84133 0.66 0.953033
Target:  5'- --gGGCGGGgucgcUGgcgGGCC-UCGGCCACg -3'
miRNA:   3'- aagUCGUCCa----ACa--UCGGcAGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 107291 0.66 0.948712
Target:  5'- -gCGGCAGGcacuccGCCG-CGGCCACg -3'
miRNA:   3'- aaGUCGUCCaacau-CGGCaGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 122140 0.66 0.944134
Target:  5'- -gCAGguGGUgGUgcacGGCCGacgccagcUCGACCGCg -3'
miRNA:   3'- aaGUCguCCAaCA----UCGGC--------AGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 62141 0.66 0.944134
Target:  5'- gUCAGCAGGUUGgGGa--UCAGCgACa -3'
miRNA:   3'- aAGUCGUCCAACaUCggcAGUUGgUG- -5'
23836 5' -53 NC_005261.1 + 38612 0.66 0.944134
Target:  5'- --uGGCGGGUguUGGCCG-CGGCCGa -3'
miRNA:   3'- aagUCGUCCAacAUCGGCaGUUGGUg -5'
23836 5' -53 NC_005261.1 + 122250 0.66 0.93262
Target:  5'- aUCAGCAGGgccagcgccgccGCCGUCAggGCCGu -3'
miRNA:   3'- aAGUCGUCCaacau-------CGGCAGU--UGGUg -5'
23836 5' -53 NC_005261.1 + 82716 0.67 0.923217
Target:  5'- --gAGCAGGcaGUccacGCCGUCcAGCCGCg -3'
miRNA:   3'- aagUCGUCCaaCAu---CGGCAG-UUGGUG- -5'
23836 5' -53 NC_005261.1 + 8504 0.67 0.91733
Target:  5'- -cCAGCGGGgg--GGCCGgcCAAUCGCa -3'
miRNA:   3'- aaGUCGUCCaacaUCGGCa-GUUGGUG- -5'
23836 5' -53 NC_005261.1 + 39974 0.67 0.91118
Target:  5'- cUCAGCGGGUUGcgcgcGCCGcCGGCgUGCg -3'
miRNA:   3'- aAGUCGUCCAACau---CGGCaGUUG-GUG- -5'
23836 5' -53 NC_005261.1 + 80379 0.67 0.91118
Target:  5'- gUUCuGCAGcGcgaaagUGUGGCCGUCGcUCACa -3'
miRNA:   3'- -AAGuCGUC-Ca-----ACAUCGGCAGUuGGUG- -5'
23836 5' -53 NC_005261.1 + 109345 0.67 0.91118
Target:  5'- gUCGGCGGccgcGUcGCCGUcCAGCCGCu -3'
miRNA:   3'- aAGUCGUCcaa-CAuCGGCA-GUUGGUG- -5'
23836 5' -53 NC_005261.1 + 98564 0.67 0.91118
Target:  5'- -cCGGCGGGc---GGCCGUCcuCCGCg -3'
miRNA:   3'- aaGUCGUCCaacaUCGGCAGuuGGUG- -5'
23836 5' -53 NC_005261.1 + 133081 0.67 0.910551
Target:  5'- gUCAGCuucuucgagcgcaAGGcc---GCCGUCAACCGCg -3'
miRNA:   3'- aAGUCG-------------UCCaacauCGGCAGUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.