miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23836 5' -53 NC_005261.1 + 66027 0.66 0.957102
Target:  5'- -cCGGCGcGUcGUAGUCGgCGGCCACg -3'
miRNA:   3'- aaGUCGUcCAaCAUCGGCaGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 118170 0.69 0.836017
Target:  5'- -gCGGCGGGgcuu-GCCGUCuggGCCGCg -3'
miRNA:   3'- aaGUCGUCCaacauCGGCAGu--UGGUG- -5'
23836 5' -53 NC_005261.1 + 42630 0.69 0.844571
Target:  5'- -cCAGCGGGgacucGGCCGccgCGGCCGCg -3'
miRNA:   3'- aaGUCGUCCaaca-UCGGCa--GUUGGUG- -5'
23836 5' -53 NC_005261.1 + 71545 0.69 0.844571
Target:  5'- cUCGcGCAuGGUcgaguacaUGUGGCUGUCcAGCCGCg -3'
miRNA:   3'- aAGU-CGU-CCA--------ACAUCGGCAG-UUGGUG- -5'
23836 5' -53 NC_005261.1 + 107181 0.69 0.844571
Target:  5'- cUCGGCGGc--GUAGCCcugCAGCCGCg -3'
miRNA:   3'- aAGUCGUCcaaCAUCGGca-GUUGGUG- -5'
23836 5' -53 NC_005261.1 + 69667 0.69 0.852913
Target:  5'- -gCGGCuGGggGUGGCCGgcaUCAcGCCGCc -3'
miRNA:   3'- aaGUCGuCCaaCAUCGGC---AGU-UGGUG- -5'
23836 5' -53 NC_005261.1 + 130184 0.69 0.861034
Target:  5'- -gCAGCAGGg---AGCUGaCGGCCACc -3'
miRNA:   3'- aaGUCGUCCaacaUCGGCaGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 59916 0.67 0.908648
Target:  5'- --gAGCAGGUcgacgagcucGCCGUCGGCCAUc -3'
miRNA:   3'- aagUCGUCCAacau------CGGCAGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 133081 0.67 0.910551
Target:  5'- gUCAGCuucuucgagcgcaAGGcc---GCCGUCAACCGCg -3'
miRNA:   3'- aAGUCG-------------UCCaacauCGGCAGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 115396 0.7 0.797017
Target:  5'- cUUCAGCGGGUcGUcgaccgcgggcggcAGCCGg-GGCCGCg -3'
miRNA:   3'- -AAGUCGUCCAaCA--------------UCGGCagUUGGUG- -5'
23836 5' -53 NC_005261.1 + 87540 0.7 0.797017
Target:  5'- gUUCGGguGGUagUGgcugggcgucagcuUGGCCGUCAGCCccGCg -3'
miRNA:   3'- -AAGUCguCCA--AC--------------AUCGGCAGUUGG--UG- -5'
23836 5' -53 NC_005261.1 + 23594 0.7 0.770931
Target:  5'- -gCGGCGGuGgugGUGGCUGUCGccGCCGCu -3'
miRNA:   3'- aaGUCGUC-Caa-CAUCGGCAGU--UGGUG- -5'
23836 5' -53 NC_005261.1 + 17143 0.74 0.592228
Target:  5'- -cCGGCGGGUcgacGUAGaCCGUCAcCCGCg -3'
miRNA:   3'- aaGUCGUCCAa---CAUC-GGCAGUuGGUG- -5'
23836 5' -53 NC_005261.1 + 123612 0.73 0.645863
Target:  5'- -gCAGCAGGUUcaGGCUGcccaUCAGCCGCu -3'
miRNA:   3'- aaGUCGUCCAAcaUCGGC----AGUUGGUG- -5'
23836 5' -53 NC_005261.1 + 50127 0.72 0.667298
Target:  5'- -cCAGCAGGUccacaagcUGUgcguuGGCCGUCGcguccaucGCCACa -3'
miRNA:   3'- aaGUCGUCCA--------ACA-----UCGGCAGU--------UGGUG- -5'
23836 5' -53 NC_005261.1 + 23944 0.72 0.699188
Target:  5'- -gCGGCGGGUUcggGGUCGUCGGCaCGCg -3'
miRNA:   3'- aaGUCGUCCAAca-UCGGCAGUUG-GUG- -5'
23836 5' -53 NC_005261.1 + 58681 0.71 0.730519
Target:  5'- -aCGGCAGGagGcccgGGCCGUCAgggcgcGCCGCu -3'
miRNA:   3'- aaGUCGUCCaaCa---UCGGCAGU------UGGUG- -5'
23836 5' -53 NC_005261.1 + 102300 0.71 0.750955
Target:  5'- ---cGCGGGUcGUAGCCGcgcgccgCGGCCGCg -3'
miRNA:   3'- aaguCGUCCAaCAUCGGCa------GUUGGUG- -5'
23836 5' -53 NC_005261.1 + 121439 0.71 0.761006
Target:  5'- -gCGGCGGGgcGggcauggGGCCGUCGAUgGCg -3'
miRNA:   3'- aaGUCGUCCaaCa------UCGGCAGUUGgUG- -5'
23836 5' -53 NC_005261.1 + 121502 0.71 0.761006
Target:  5'- -gCGGCGGGgcGggcauggGGCCGUCGAUgGCg -3'
miRNA:   3'- aaGUCGUCCaaCa------UCGGCAGUUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.