Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23836 | 5' | -53 | NC_005261.1 | + | 87540 | 0.7 | 0.797017 |
Target: 5'- gUUCGGguGGUagUGgcugggcgucagcuUGGCCGUCAGCCccGCg -3' miRNA: 3'- -AAGUCguCCA--AC--------------AUCGGCAGUUGG--UG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 66027 | 0.66 | 0.957102 |
Target: 5'- -cCGGCGcGUcGUAGUCGgCGGCCACg -3' miRNA: 3'- aaGUCGUcCAaCAUCGGCaGUUGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 133081 | 0.67 | 0.910551 |
Target: 5'- gUCAGCuucuucgagcgcaAGGcc---GCCGUCAACCGCg -3' miRNA: 3'- aAGUCG-------------UCCaacauCGGCAGUUGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 59916 | 0.67 | 0.908648 |
Target: 5'- --gAGCAGGUcgacgagcucGCCGUCGGCCAUc -3' miRNA: 3'- aagUCGUCCAacau------CGGCAGUUGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 130184 | 0.69 | 0.861034 |
Target: 5'- -gCAGCAGGg---AGCUGaCGGCCACc -3' miRNA: 3'- aaGUCGUCCaacaUCGGCaGUUGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 69667 | 0.69 | 0.852913 |
Target: 5'- -gCGGCuGGggGUGGCCGgcaUCAcGCCGCc -3' miRNA: 3'- aaGUCGuCCaaCAUCGGC---AGU-UGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 107181 | 0.69 | 0.844571 |
Target: 5'- cUCGGCGGc--GUAGCCcugCAGCCGCg -3' miRNA: 3'- aAGUCGUCcaaCAUCGGca-GUUGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 71545 | 0.69 | 0.844571 |
Target: 5'- cUCGcGCAuGGUcgaguacaUGUGGCUGUCcAGCCGCg -3' miRNA: 3'- aAGU-CGU-CCA--------ACAUCGGCAG-UUGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 42630 | 0.69 | 0.844571 |
Target: 5'- -cCAGCGGGgacucGGCCGccgCGGCCGCg -3' miRNA: 3'- aaGUCGUCCaaca-UCGGCa--GUUGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 118170 | 0.69 | 0.836017 |
Target: 5'- -gCGGCGGGgcuu-GCCGUCuggGCCGCg -3' miRNA: 3'- aaGUCGUCCaacauCGGCAGu--UGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 115396 | 0.7 | 0.797017 |
Target: 5'- cUUCAGCGGGUcGUcgaccgcgggcggcAGCCGg-GGCCGCg -3' miRNA: 3'- -AAGUCGUCCAaCA--------------UCGGCagUUGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 116825 | 0.78 | 0.384812 |
Target: 5'- --gAGCAGGUguacGUGGCCGUCcccGCCGCg -3' miRNA: 3'- aagUCGUCCAa---CAUCGGCAGu--UGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 23594 | 0.7 | 0.770931 |
Target: 5'- -gCGGCGGuGgugGUGGCUGUCGccGCCGCu -3' miRNA: 3'- aaGUCGUC-Caa-CAUCGGCAGU--UGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 121502 | 0.71 | 0.761006 |
Target: 5'- -gCGGCGGGgcGggcauggGGCCGUCGAUgGCg -3' miRNA: 3'- aaGUCGUCCaaCa------UCGGCAGUUGgUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 121439 | 0.71 | 0.761006 |
Target: 5'- -gCGGCGGGgcGggcauggGGCCGUCGAUgGCg -3' miRNA: 3'- aaGUCGUCCaaCa------UCGGCAGUUGgUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 102300 | 0.71 | 0.750955 |
Target: 5'- ---cGCGGGUcGUAGCCGcgcgccgCGGCCGCg -3' miRNA: 3'- aaguCGUCCAaCAUCGGCa------GUUGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 58681 | 0.71 | 0.730519 |
Target: 5'- -aCGGCAGGagGcccgGGCCGUCAgggcgcGCCGCu -3' miRNA: 3'- aaGUCGUCCaaCa---UCGGCAGU------UGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 23944 | 0.72 | 0.699188 |
Target: 5'- -gCGGCGGGUUcggGGUCGUCGGCaCGCg -3' miRNA: 3'- aaGUCGUCCAAca-UCGGCAGUUG-GUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 50127 | 0.72 | 0.667298 |
Target: 5'- -cCAGCAGGUccacaagcUGUgcguuGGCCGUCGcguccaucGCCACa -3' miRNA: 3'- aaGUCGUCCA--------ACA-----UCGGCAGU--------UGGUG- -5' |
|||||||
23836 | 5' | -53 | NC_005261.1 | + | 123612 | 0.73 | 0.645863 |
Target: 5'- -gCAGCAGGUUcaGGCUGcccaUCAGCCGCu -3' miRNA: 3'- aaGUCGUCCAAcaUCGGC----AGUUGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home