Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23837 | 5' | -55.9 | NC_005261.1 | + | 13109 | 0.8 | 0.209585 |
Target: 5'- gGCUCggGGGCGUCGGCGGCcgcGGGGCg -3' miRNA: 3'- aUGAG--UCUGCAGUCGCUGuu-CCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 1046 | 0.75 | 0.379797 |
Target: 5'- gGCgggCGGcgGCGUUAGCGGCGcgGGGGGCUg -3' miRNA: 3'- aUGa--GUC--UGCAGUCGCUGU--UCCCCGA- -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 74342 | 0.75 | 0.396838 |
Target: 5'- gACcgCAGGCG-CGGCGGCGgaAGGGGCg -3' miRNA: 3'- aUGa-GUCUGCaGUCGCUGU--UCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 12758 | 0.73 | 0.498689 |
Target: 5'- gGCgaggucgUAGGCGgCGGUGGCGGGGGGCUc -3' miRNA: 3'- aUGa------GUCUGCaGUCGCUGUUCCCCGA- -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 5536 | 0.72 | 0.548717 |
Target: 5'- gGCUUcGGCGcgCAGCGAgaCGGGGGGCg -3' miRNA: 3'- aUGAGuCUGCa-GUCGCU--GUUCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 59776 | 0.72 | 0.558923 |
Target: 5'- gUGCUCGGcCG-CAGCGACGgcGGcGGGCg -3' miRNA: 3'- -AUGAGUCuGCaGUCGCUGU--UC-CCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 130238 | 0.71 | 0.589829 |
Target: 5'- cGCUCAGGCGccgcgcCAGCGGCucguacugcGGGGCg -3' miRNA: 3'- aUGAGUCUGCa-----GUCGCUGuu-------CCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 95722 | 0.71 | 0.596051 |
Target: 5'- cGCUCGGgcccgccGCGcUCAGCGGCGccgccgccgccgccGGGGGCg -3' miRNA: 3'- aUGAGUC-------UGC-AGUCGCUGU--------------UCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 47694 | 0.71 | 0.600204 |
Target: 5'- cGCccgCGGcgccGCGUCGGCGGCGucGGGGGCc -3' miRNA: 3'- aUGa--GUC----UGCAGUCGCUGU--UCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 127630 | 0.71 | 0.62102 |
Target: 5'- gGC-CGGACGcgacggCGGCGGCGccgGGGGGCg -3' miRNA: 3'- aUGaGUCUGCa-----GUCGCUGU---UCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 88801 | 0.71 | 0.631445 |
Target: 5'- cGCgcagcaGGACGcCGGCGGCGGGGcGGCg -3' miRNA: 3'- aUGag----UCUGCaGUCGCUGUUCC-CCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 24377 | 0.7 | 0.641871 |
Target: 5'- gUGCUCccGGugggcuCGUCGGCGGCGgggcgguccuGGGGGCUc -3' miRNA: 3'- -AUGAG--UCu-----GCAGUCGCUGU----------UCCCCGA- -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 19012 | 0.69 | 0.714127 |
Target: 5'- gUGCaggaGGugGUCAGCGuCGcGGGGCa -3' miRNA: 3'- -AUGag--UCugCAGUCGCuGUuCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 94281 | 0.69 | 0.718179 |
Target: 5'- gGCUCuuGGCGcagagcauggcguagUCGGCGACccaGGGGGGCg -3' miRNA: 3'- aUGAGu-CUGC---------------AGUCGCUG---UUCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 18661 | 0.69 | 0.724235 |
Target: 5'- -uCUCGGGCGggcccCAGCgGGCgAAGGGGCc -3' miRNA: 3'- auGAGUCUGCa----GUCG-CUG-UUCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 98138 | 0.69 | 0.724235 |
Target: 5'- cACcggCGGcCGUCGGCGGCAAGGccgcgGGCg -3' miRNA: 3'- aUGa--GUCuGCAGUCGCUGUUCC-----CCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 81338 | 0.68 | 0.754027 |
Target: 5'- --gUCGGGgcCGUCGGCGgggcgggggcuuGCGGGGGGCg -3' miRNA: 3'- augAGUCU--GCAGUCGC------------UGUUCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 22740 | 0.68 | 0.754027 |
Target: 5'- cAgUCGGGCGcggggCGGCGGCGgcccacgcgucuGGGGGCg -3' miRNA: 3'- aUgAGUCUGCa----GUCGCUGU------------UCCCCGa -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 130475 | 0.68 | 0.763748 |
Target: 5'- gGCUCGcGGCGugccUCGGCGGCGAGGGc-- -3' miRNA: 3'- aUGAGU-CUGC----AGUCGCUGUUCCCcga -5' |
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23837 | 5' | -55.9 | NC_005261.1 | + | 1395 | 0.68 | 0.773347 |
Target: 5'- cGC-CGGGCGccgcggccgCGGCGGCGgcGGGGGCg -3' miRNA: 3'- aUGaGUCUGCa--------GUCGCUGU--UCCCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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