miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23837 5' -55.9 NC_005261.1 + 34909 0.66 0.890003
Target:  5'- gACgCGGAgGUCGGgGcgcggccacGCGGGGGGCg -3'
miRNA:   3'- aUGaGUCUgCAGUCgC---------UGUUCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 19012 0.69 0.714127
Target:  5'- gUGCaggaGGugGUCAGCGuCGcGGGGCa -3'
miRNA:   3'- -AUGag--UCugCAGUCGCuGUuCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 94281 0.69 0.718179
Target:  5'- gGCUCuuGGCGcagagcauggcguagUCGGCGACccaGGGGGGCg -3'
miRNA:   3'- aUGAGu-CUGC---------------AGUCGCUG---UUCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 18661 0.69 0.724235
Target:  5'- -uCUCGGGCGggcccCAGCgGGCgAAGGGGCc -3'
miRNA:   3'- auGAGUCUGCa----GUCG-CUG-UUCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 98138 0.69 0.724235
Target:  5'- cACcggCGGcCGUCGGCGGCAAGGccgcgGGCg -3'
miRNA:   3'- aUGa--GUCuGCAGUCGCUGUUCC-----CCGa -5'
23837 5' -55.9 NC_005261.1 + 22740 0.68 0.754027
Target:  5'- cAgUCGGGCGcggggCGGCGGCGgcccacgcgucuGGGGGCg -3'
miRNA:   3'- aUgAGUCUGCa----GUCGCUGU------------UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 81338 0.68 0.754027
Target:  5'- --gUCGGGgcCGUCGGCGgggcgggggcuuGCGGGGGGCg -3'
miRNA:   3'- augAGUCU--GCAGUCGC------------UGUUCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 130475 0.68 0.763748
Target:  5'- gGCUCGcGGCGugccUCGGCGGCGAGGGc-- -3'
miRNA:   3'- aUGAGU-CUGC----AGUCGCUGUUCCCcga -5'
23837 5' -55.9 NC_005261.1 + 1395 0.68 0.773347
Target:  5'- cGC-CGGGCGccgcggccgCGGCGGCGgcGGGGGCg -3'
miRNA:   3'- aUGaGUCUGCa--------GUCGCUGU--UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 24377 0.7 0.641871
Target:  5'- gUGCUCccGGugggcuCGUCGGCGGCGgggcgguccuGGGGGCUc -3'
miRNA:   3'- -AUGAG--UCu-----GCAGUCGCUGU----------UCCCCGA- -5'
23837 5' -55.9 NC_005261.1 + 88801 0.71 0.631445
Target:  5'- cGCgcagcaGGACGcCGGCGGCGGGGcGGCg -3'
miRNA:   3'- aUGag----UCUGCaGUCGCUGUUCC-CCGa -5'
23837 5' -55.9 NC_005261.1 + 127630 0.71 0.62102
Target:  5'- gGC-CGGACGcgacggCGGCGGCGccgGGGGGCg -3'
miRNA:   3'- aUGaGUCUGCa-----GUCGCUGU---UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 1046 0.75 0.379797
Target:  5'- gGCgggCGGcgGCGUUAGCGGCGcgGGGGGCUg -3'
miRNA:   3'- aUGa--GUC--UGCAGUCGCUGU--UCCCCGA- -5'
23837 5' -55.9 NC_005261.1 + 74342 0.75 0.396838
Target:  5'- gACcgCAGGCG-CGGCGGCGgaAGGGGCg -3'
miRNA:   3'- aUGa-GUCUGCaGUCGCUGU--UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 12758 0.73 0.498689
Target:  5'- gGCgaggucgUAGGCGgCGGUGGCGGGGGGCUc -3'
miRNA:   3'- aUGa------GUCUGCaGUCGCUGUUCCCCGA- -5'
23837 5' -55.9 NC_005261.1 + 5536 0.72 0.548717
Target:  5'- gGCUUcGGCGcgCAGCGAgaCGGGGGGCg -3'
miRNA:   3'- aUGAGuCUGCa-GUCGCU--GUUCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 59776 0.72 0.558923
Target:  5'- gUGCUCGGcCG-CAGCGACGgcGGcGGGCg -3'
miRNA:   3'- -AUGAGUCuGCaGUCGCUGU--UC-CCCGa -5'
23837 5' -55.9 NC_005261.1 + 130238 0.71 0.589829
Target:  5'- cGCUCAGGCGccgcgcCAGCGGCucguacugcGGGGCg -3'
miRNA:   3'- aUGAGUCUGCa-----GUCGCUGuu-------CCCCGa -5'
23837 5' -55.9 NC_005261.1 + 95722 0.71 0.596051
Target:  5'- cGCUCGGgcccgccGCGcUCAGCGGCGccgccgccgccgccGGGGGCg -3'
miRNA:   3'- aUGAGUC-------UGC-AGUCGCUGU--------------UCCCCGa -5'
23837 5' -55.9 NC_005261.1 + 47694 0.71 0.600204
Target:  5'- cGCccgCGGcgccGCGUCGGCGGCGucGGGGGCc -3'
miRNA:   3'- aUGa--GUC----UGCAGUCGCUGU--UCCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.