Results 41 - 60 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23838 | 3' | -59 | NC_005261.1 | + | 28728 | 0.67 | 0.680335 |
Target: 5'- gGGCCUCGGCGCccuCcGAGGCCccaGAg -3' miRNA: 3'- -CCGGAGCUGCGaccGaCUCCGGua-CU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 107739 | 0.67 | 0.680335 |
Target: 5'- cGCCUCGGcCGC-GGggGGGGCCAc-- -3' miRNA: 3'- cCGGAGCU-GCGaCCgaCUCCGGUacu -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 31680 | 0.67 | 0.680335 |
Target: 5'- uGGCCgCGGCGCggcggcGGCUGAucgugaucgacGCCGUGGa -3' miRNA: 3'- -CCGGaGCUGCGa-----CCGACUc----------CGGUACU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 32063 | 0.67 | 0.670286 |
Target: 5'- uGGCCgCGcagaGCGCgGcGCUGGGGCUcgGGg -3' miRNA: 3'- -CCGGaGC----UGCGaC-CGACUCCGGuaCU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 118042 | 0.68 | 0.660207 |
Target: 5'- cGGCCgCGACGCccGcGCUGGcGGCCGcGGc -3' miRNA: 3'- -CCGGaGCUGCGa-C-CGACU-CCGGUaCU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 16214 | 0.68 | 0.660207 |
Target: 5'- uGGCCUCGAgGCUcGGCcagcccucGGGGCgGUcGAc -3' miRNA: 3'- -CCGGAGCUgCGA-CCGa-------CUCCGgUA-CU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 82592 | 0.68 | 0.660207 |
Target: 5'- cGuCCUCGuuGCGCUGGUccGGGCgCGUGAg -3' miRNA: 3'- cC-GGAGC--UGCGACCGacUCCG-GUACU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 5864 | 0.68 | 0.650106 |
Target: 5'- gGGUCUCGACgacggagagagGCUGGCUGGcucGGCUg--- -3' miRNA: 3'- -CCGGAGCUG-----------CGACCGACU---CCGGuacu -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 85726 | 0.68 | 0.639991 |
Target: 5'- uGCCgUGGCaCUGGCUGAGcGCCAa-- -3' miRNA: 3'- cCGGaGCUGcGACCGACUC-CGGUacu -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 32148 | 0.68 | 0.639991 |
Target: 5'- gGGgCUCGGCGCgccGCUGcGGCCGg-- -3' miRNA: 3'- -CCgGAGCUGCGac-CGACuCCGGUacu -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 36637 | 0.68 | 0.639991 |
Target: 5'- cGGCgCgaagcCGGCGCgcgGGCuUGGGGCCAg-- -3' miRNA: 3'- -CCG-Ga----GCUGCGa--CCG-ACUCCGGUacu -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 120608 | 0.68 | 0.639991 |
Target: 5'- cGGCCUCGGCGCcguggGGCuccugcuggUGGcGGCCcUGu -3' miRNA: 3'- -CCGGAGCUGCGa----CCG---------ACU-CCGGuACu -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 55756 | 0.68 | 0.639991 |
Target: 5'- cGGCCUCGACGC-GcGCcGccGCCcgGAu -3' miRNA: 3'- -CCGGAGCUGCGaC-CGaCucCGGuaCU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 118402 | 0.68 | 0.62987 |
Target: 5'- cGGCCgCGggcgccgcagccGCGCUGGCUGucGCCGc-- -3' miRNA: 3'- -CCGGaGC------------UGCGACCGACucCGGUacu -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 3919 | 0.68 | 0.62987 |
Target: 5'- cGCCgcCGGCGCcGGCcuccggGuAGGCCAUGGg -3' miRNA: 3'- cCGGa-GCUGCGaCCGa-----C-UCCGGUACU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 48305 | 0.68 | 0.619751 |
Target: 5'- aGGCCUCGggggGCGCgucgGGCccGGGCUcgGGg -3' miRNA: 3'- -CCGGAGC----UGCGa---CCGacUCCGGuaCU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 53588 | 0.68 | 0.619751 |
Target: 5'- gGGCCggCGGCGCcccaGCggaccgacGAGGCCGUGGc -3' miRNA: 3'- -CCGGa-GCUGCGac--CGa-------CUCCGGUACU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 107132 | 0.69 | 0.599547 |
Target: 5'- cGGCgaCGGCGCccacGGCcGcGGCCAUGGa -3' miRNA: 3'- -CCGgaGCUGCGa---CCGaCuCCGGUACU- -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 51512 | 0.69 | 0.589477 |
Target: 5'- cGGCCagaugcUgGGCGCcgGGCUGGGGCUGUc- -3' miRNA: 3'- -CCGG------AgCUGCGa-CCGACUCCGGUAcu -5' |
|||||||
23838 | 3' | -59 | NC_005261.1 | + | 61034 | 0.69 | 0.589477 |
Target: 5'- cGGCaccgCGGCaGCUGGCUGgugcuGGGCC-UGGa -3' miRNA: 3'- -CCGga--GCUG-CGACCGAC-----UCCGGuACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home