miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23838 3' -59 NC_005261.1 + 133608 0.66 0.739508
Target:  5'- cGGCCcaccUCG-CGCUGGCgcuguGGGCCGc-- -3'
miRNA:   3'- -CCGG----AGCuGCGACCGac---UCCGGUacu -5'
23838 3' -59 NC_005261.1 + 1174 0.66 0.739508
Target:  5'- cGGCCcgCGcCGC-GGCcGGGGCCggGGc -3'
miRNA:   3'- -CCGGa-GCuGCGaCCGaCUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 111457 0.66 0.739508
Target:  5'- aGCCg-GGCGCcGGC-GAGGCCAa-- -3'
miRNA:   3'- cCGGagCUGCGaCCGaCUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 32324 0.66 0.729823
Target:  5'- cGGCCgCGGCGCccGGCgu-GGCC-UGGg -3'
miRNA:   3'- -CCGGaGCUGCGa-CCGacuCCGGuACU- -5'
23838 3' -59 NC_005261.1 + 91000 0.66 0.72885
Target:  5'- cGGCCUCGuCGCcGGCggcaagaugcugaUGAaGGgCGUGGa -3'
miRNA:   3'- -CCGGAGCuGCGaCCG-------------ACU-CCgGUACU- -5'
23838 3' -59 NC_005261.1 + 2768 0.66 0.727876
Target:  5'- gGGCCUCGAgGCccgcccccgaggGGCUGccgccggcGGCCggGAg -3'
miRNA:   3'- -CCGGAGCUgCGa-----------CCGACu-------CCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 110403 0.67 0.720055
Target:  5'- cGCUUCuACGcCUGcCUGcAGGCCAUGAu -3'
miRNA:   3'- cCGGAGcUGC-GACcGAC-UCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 29693 0.67 0.720055
Target:  5'- uGCCgcaCGugGC-GGcCUGcguGGCCAUGAg -3'
miRNA:   3'- cCGGa--GCugCGaCC-GACu--CCGGUACU- -5'
23838 3' -59 NC_005261.1 + 83847 0.67 0.720055
Target:  5'- gGGCCgCGGCcccGCUgGGCUG-GGCCGggccgGAc -3'
miRNA:   3'- -CCGGaGCUG---CGA-CCGACuCCGGUa----CU- -5'
23838 3' -59 NC_005261.1 + 2971 0.67 0.710214
Target:  5'- gGGCC-CGG-GCUgaGGCUGGGGCUcgGc -3'
miRNA:   3'- -CCGGaGCUgCGA--CCGACUCCGGuaCu -5'
23838 3' -59 NC_005261.1 + 39805 0.67 0.710214
Target:  5'- cGGCCgcCGGCGCcaGGCUcuGGCCGUa- -3'
miRNA:   3'- -CCGGa-GCUGCGa-CCGAcuCCGGUAcu -5'
23838 3' -59 NC_005261.1 + 133215 0.67 0.710214
Target:  5'- cGCCgUCGAgGCcGaGCUGGGGCCcuacAUGGc -3'
miRNA:   3'- cCGG-AGCUgCGaC-CGACUCCGG----UACU- -5'
23838 3' -59 NC_005261.1 + 30893 0.67 0.700307
Target:  5'- cGCC-CGA-GCUcgGGCUGGGGCCGc-- -3'
miRNA:   3'- cCGGaGCUgCGA--CCGACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 117687 0.67 0.700307
Target:  5'- gGGCCcgcggCGAgGCcGGCccUGAGGCCGg-- -3'
miRNA:   3'- -CCGGa----GCUgCGaCCG--ACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 28551 0.67 0.700307
Target:  5'- cGGCCcugcUCGACGCggcccgccgGGCcGAGGCgCGcGAg -3'
miRNA:   3'- -CCGG----AGCUGCGa--------CCGaCUCCG-GUaCU- -5'
23838 3' -59 NC_005261.1 + 49194 0.67 0.690345
Target:  5'- aGGcCCUCGGCcgacaGCgagGGCggGAGGCCGg-- -3'
miRNA:   3'- -CC-GGAGCUG-----CGa--CCGa-CUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 121437 0.67 0.690345
Target:  5'- gGGCggCGGgGCgGGCaUGGGGCCGUcGAu -3'
miRNA:   3'- -CCGgaGCUgCGaCCG-ACUCCGGUA-CU- -5'
23838 3' -59 NC_005261.1 + 121500 0.67 0.690345
Target:  5'- gGGCggCGGgGCgGGCaUGGGGCCGUcGAu -3'
miRNA:   3'- -CCGgaGCUgCGaCCG-ACUCCGGUA-CU- -5'
23838 3' -59 NC_005261.1 + 91699 0.67 0.690345
Target:  5'- cGCCUgCGACaGCcGGCUGcaAGGCCGg-- -3'
miRNA:   3'- cCGGA-GCUG-CGaCCGAC--UCCGGUacu -5'
23838 3' -59 NC_005261.1 + 76865 0.67 0.690345
Target:  5'- cGCCU-GGCGCccGGCgagGAGGCCGa-- -3'
miRNA:   3'- cCGGAgCUGCGa-CCGa--CUCCGGUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.