miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23838 3' -59 NC_005261.1 + 33604 0.7 0.520184
Target:  5'- cGGCgC-CGGCGCgGGCggcGGGGCCcgGGg -3'
miRNA:   3'- -CCG-GaGCUGCGaCCGa--CUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 40226 0.7 0.529913
Target:  5'- aGCgUCGuCGUcucUGGCccgGGGGCCGUGAg -3'
miRNA:   3'- cCGgAGCuGCG---ACCGa--CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 57861 0.7 0.539708
Target:  5'- aGGCCUCGGCGCUcgGGUcggGAagucGGCCGg-- -3'
miRNA:   3'- -CCGGAGCUGCGA--CCGa--CU----CCGGUacu -5'
23838 3' -59 NC_005261.1 + 4968 0.7 0.539708
Target:  5'- cGGCCgCGGCGUccuCUGGGGCCcgGAg -3'
miRNA:   3'- -CCGGaGCUGCGaccGACUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 128864 0.7 0.549564
Target:  5'- cGCCUCGuCGCUgccgacgacgaGGCgGGGGCCggGUGGg -3'
miRNA:   3'- cCGGAGCuGCGA-----------CCGaCUCCGG--UACU- -5'
23838 3' -59 NC_005261.1 + 48774 0.69 0.556496
Target:  5'- cGGCC-CGACgaGCUcGGCgaucgccggcuccgUGAGGCCGUGc -3'
miRNA:   3'- -CCGGaGCUG--CGA-CCG--------------ACUCCGGUACu -5'
23838 3' -59 NC_005261.1 + 121985 0.69 0.569434
Target:  5'- cGCCgcccaGCUGGCgGAGGUCAUGGu -3'
miRNA:   3'- cCGGagcugCGACCGaCUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 61241 0.69 0.569434
Target:  5'- cGGCgcgagCUCGAcuCGCUGGCcgccuccGGGGCCGUGc -3'
miRNA:   3'- -CCG-----GAGCU--GCGACCGa------CUCCGGUACu -5'
23838 3' -59 NC_005261.1 + 90742 0.69 0.585457
Target:  5'- cGCCUgaGGCGCUGGCgcgggacuuccccGAGGCCGc-- -3'
miRNA:   3'- cCGGAg-CUGCGACCGa------------CUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 61034 0.69 0.589477
Target:  5'- cGGCaccgCGGCaGCUGGCUGgugcuGGGCC-UGGa -3'
miRNA:   3'- -CCGga--GCUG-CGACCGAC-----UCCGGuACU- -5'
23838 3' -59 NC_005261.1 + 51512 0.69 0.589477
Target:  5'- cGGCCagaugcUgGGCGCcgGGCUGGGGCUGUc- -3'
miRNA:   3'- -CCGG------AgCUGCGa-CCGACUCCGGUAcu -5'
23838 3' -59 NC_005261.1 + 107132 0.69 0.599547
Target:  5'- cGGCgaCGGCGCccacGGCcGcGGCCAUGGa -3'
miRNA:   3'- -CCGgaGCUGCGa---CCGaCuCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 48305 0.68 0.619751
Target:  5'- aGGCCUCGggggGCGCgucgGGCccGGGCUcgGGg -3'
miRNA:   3'- -CCGGAGC----UGCGa---CCGacUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 53588 0.68 0.619751
Target:  5'- gGGCCggCGGCGCcccaGCggaccgacGAGGCCGUGGc -3'
miRNA:   3'- -CCGGa-GCUGCGac--CGa-------CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 118402 0.68 0.62987
Target:  5'- cGGCCgCGggcgccgcagccGCGCUGGCUGucGCCGc-- -3'
miRNA:   3'- -CCGGaGC------------UGCGACCGACucCGGUacu -5'
23838 3' -59 NC_005261.1 + 3919 0.68 0.62987
Target:  5'- cGCCgcCGGCGCcGGCcuccggGuAGGCCAUGGg -3'
miRNA:   3'- cCGGa-GCUGCGaCCGa-----C-UCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 85726 0.68 0.639991
Target:  5'- uGCCgUGGCaCUGGCUGAGcGCCAa-- -3'
miRNA:   3'- cCGGaGCUGcGACCGACUC-CGGUacu -5'
23838 3' -59 NC_005261.1 + 120608 0.68 0.639991
Target:  5'- cGGCCUCGGCGCcguggGGCuccugcuggUGGcGGCCcUGu -3'
miRNA:   3'- -CCGGAGCUGCGa----CCG---------ACU-CCGGuACu -5'
23838 3' -59 NC_005261.1 + 36637 0.68 0.639991
Target:  5'- cGGCgCgaagcCGGCGCgcgGGCuUGGGGCCAg-- -3'
miRNA:   3'- -CCG-Ga----GCUGCGa--CCG-ACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 55756 0.68 0.639991
Target:  5'- cGGCCUCGACGC-GcGCcGccGCCcgGAu -3'
miRNA:   3'- -CCGGAGCUGCGaC-CGaCucCGGuaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.