miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23838 3' -59 NC_005261.1 + 14270 0.8 0.138336
Target:  5'- cGGCUUCGGgGCUggGGCUGGGGCCAa-- -3'
miRNA:   3'- -CCGGAGCUgCGA--CCGACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 68074 0.78 0.169352
Target:  5'- uGGUCUCGGucgccCGCgggGGCgggGAGGCCGUGAa -3'
miRNA:   3'- -CCGGAGCU-----GCGa--CCGa--CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 74494 0.74 0.322952
Target:  5'- gGGaUCUCGGCGCUcuucggggcGGCgccGGGGCCAUGGc -3'
miRNA:   3'- -CC-GGAGCUGCGA---------CCGa--CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 94853 0.73 0.345295
Target:  5'- uGGCCUCGGCGCUcGCgcacGGCCcgGGc -3'
miRNA:   3'- -CCGGAGCUGCGAcCGacu-CCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 95437 0.73 0.368726
Target:  5'- uGGCCUCGACGCaGaGCacGGGCC-UGAg -3'
miRNA:   3'- -CCGGAGCUGCGaC-CGacUCCGGuACU- -5'
23838 3' -59 NC_005261.1 + 125873 0.72 0.401622
Target:  5'- cGGCCggggCGGCGCccuUGGCUGAaGGCgCcUGAg -3'
miRNA:   3'- -CCGGa---GCUGCG---ACCGACU-CCG-GuACU- -5'
23838 3' -59 NC_005261.1 + 82873 0.72 0.410133
Target:  5'- cGGCgaCGGCGCUGGCgGuGGCCu--- -3'
miRNA:   3'- -CCGgaGCUGCGACCGaCuCCGGuacu -5'
23838 3' -59 NC_005261.1 + 30784 0.72 0.410133
Target:  5'- cGGCCgCGGCGgUGgagguGCUGGGGCCGgagGAg -3'
miRNA:   3'- -CCGGaGCUGCgAC-----CGACUCCGGUa--CU- -5'
23838 3' -59 NC_005261.1 + 98690 0.72 0.427486
Target:  5'- gGGCCggaGGCGCggccgGaGCUGGGGCCggGGu -3'
miRNA:   3'- -CCGGag-CUGCGa----C-CGACUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 125715 0.72 0.436325
Target:  5'- cGGCCgccgCGG-GCUcGGCUGGGGCCGc-- -3'
miRNA:   3'- -CCGGa---GCUgCGA-CCGACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 96988 0.71 0.451588
Target:  5'- cGGCCUCGGCGC-GGCUaagcgcgccauuggGcGGGCCGUcGGg -3'
miRNA:   3'- -CCGGAGCUGCGaCCGA--------------C-UCCGGUA-CU- -5'
23838 3' -59 NC_005261.1 + 77069 0.71 0.458871
Target:  5'- uGGCCggugccgcgcgaGGCGCUGGCgcgGAcgcugcucucgacGGCCGUGAa -3'
miRNA:   3'- -CCGGag----------CUGCGACCGa--CU-------------CCGGUACU- -5'
23838 3' -59 NC_005261.1 + 99461 0.71 0.472692
Target:  5'- gGGCCgacccgcggCGGCGCUGGCcgcUGcGGCCAg-- -3'
miRNA:   3'- -CCGGa--------GCUGCGACCG---ACuCCGGUacu -5'
23838 3' -59 NC_005261.1 + 1836 0.71 0.491441
Target:  5'- cGGCCUCGGCGCgcgcgaaGGCgccGGGCCc--- -3'
miRNA:   3'- -CCGGAGCUGCGa------CCGac-UCCGGuacu -5'
23838 3' -59 NC_005261.1 + 21200 0.7 0.500943
Target:  5'- cGGCCgcgGACGCUGGCcccGGCCGcGAc -3'
miRNA:   3'- -CCGGag-CUGCGACCGacuCCGGUaCU- -5'
23838 3' -59 NC_005261.1 + 51782 0.7 0.510526
Target:  5'- cGGCgUCGcccUGCUGGCcGuGGCCAUGc -3'
miRNA:   3'- -CCGgAGCu--GCGACCGaCuCCGGUACu -5'
23838 3' -59 NC_005261.1 + 44015 0.7 0.510526
Target:  5'- cGGCUUCGGCGC-GGCgGGcGGCCGc-- -3'
miRNA:   3'- -CCGGAGCUGCGaCCGaCU-CCGGUacu -5'
23838 3' -59 NC_005261.1 + 46078 0.7 0.517279
Target:  5'- cGCCUCGugGCcggacacgagcacgUacGGCcgGGGGCCGUGGu -3'
miRNA:   3'- cCGGAGCugCG--------------A--CCGa-CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 57789 0.7 0.520184
Target:  5'- cGGCgUCG-CGCggcgGGCgcgcGaAGGCCGUGAa -3'
miRNA:   3'- -CCGgAGCuGCGa---CCGa---C-UCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 91199 0.7 0.520184
Target:  5'- cGCUUCGGCGCcgugcUGGCcGAGGCCc--- -3'
miRNA:   3'- cCGGAGCUGCG-----ACCGaCUCCGGuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.