Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23838 | 3' | -59 | NC_005261.1 | + | 47459 | 0.66 | 0.758595 |
Target: 5'- cGGCC-CGcuuGCGCgggGGCUG-GGCgAUGu -3' miRNA: 3'- -CCGGaGC---UGCGa--CCGACuCCGgUACu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 90124 | 0.66 | 0.777245 |
Target: 5'- cGGCCcgCGGCGagGGCgaggaggGGGGCgAUGGg -3' miRNA: 3'- -CCGGa-GCUGCgaCCGa------CUCCGgUACU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 25277 | 0.66 | 0.749102 |
Target: 5'- cGCCgcgagggGGCGC-GGuCUGuGGCCGUGAg -3' miRNA: 3'- cCGGag-----CUGCGaCC-GACuCCGGUACU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 111457 | 0.66 | 0.739508 |
Target: 5'- aGCCg-GGCGCcGGC-GAGGCCAa-- -3' miRNA: 3'- cCGGagCUGCGaCCGaCUCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 133608 | 0.66 | 0.739508 |
Target: 5'- cGGCCcaccUCG-CGCUGGCgcuguGGGCCGc-- -3' miRNA: 3'- -CCGG----AGCuGCGACCGac---UCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 33840 | 0.66 | 0.767979 |
Target: 5'- gGGCCcccUGGCGCUGGgc-GGGCCggGAg -3' miRNA: 3'- -CCGGa--GCUGCGACCgacUCCGGuaCU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 97682 | 0.66 | 0.749102 |
Target: 5'- gGGCUUgGGCGg-GGCUGccgGGGCgGUGGg -3' miRNA: 3'- -CCGGAgCUGCgaCCGAC---UCCGgUACU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 132763 | 0.66 | 0.766111 |
Target: 5'- cGCCUUGuccagcacgccgucAUGCUGGagcgccccuucgccGAGGCCAUGAg -3' miRNA: 3'- cCGGAGC--------------UGCGACCga------------CUCCGGUACU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 61558 | 0.66 | 0.745276 |
Target: 5'- cGCCgacgaucugauggUGGCGCUGGUgauGGCCGUGu -3' miRNA: 3'- cCGGa------------GCUGCGACCGacuCCGGUACu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 32324 | 0.66 | 0.729823 |
Target: 5'- cGGCCgCGGCGCccGGCgu-GGCC-UGGg -3' miRNA: 3'- -CCGGaGCUGCGa-CCGacuCCGGuACU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 97137 | 0.66 | 0.777245 |
Target: 5'- cGGCCacgcUCGgagGCGCUGGCgccGGCCcgGc -3' miRNA: 3'- -CCGG----AGC---UGCGACCGacuCCGGuaCu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 1174 | 0.66 | 0.739508 |
Target: 5'- cGGCCcgCGcCGC-GGCcGGGGCCggGGc -3' miRNA: 3'- -CCGGa-GCuGCGaCCGaCUCCGGuaCU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 2768 | 0.66 | 0.727876 |
Target: 5'- gGGCCUCGAgGCccgcccccgaggGGCUGccgccggcGGCCggGAg -3' miRNA: 3'- -CCGGAGCUgCGa-----------CCGACu-------CCGGuaCU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 118658 | 0.66 | 0.749102 |
Target: 5'- gGGCCgCG-CGCUcggGGCUGAGGgCGgcgGGc -3' miRNA: 3'- -CCGGaGCuGCGA---CCGACUCCgGUa--CU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 90098 | 0.66 | 0.767979 |
Target: 5'- gGGCC-CGuuCGCcGGCUG-GGCCGa-- -3' miRNA: 3'- -CCGGaGCu-GCGaCCGACuCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 32545 | 0.66 | 0.767979 |
Target: 5'- cGGCCgCGGCGCgGGCcGGcGCgCGUGGa -3' miRNA: 3'- -CCGGaGCUGCGaCCGaCUcCG-GUACU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 13345 | 0.66 | 0.777245 |
Target: 5'- cGGCCagcggUCGGCGgaGGCUG-GGCgGc-- -3' miRNA: 3'- -CCGG-----AGCUGCgaCCGACuCCGgUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 50921 | 0.66 | 0.757651 |
Target: 5'- cGCCUCGccggGCGCggGGCUccccugcuucuacGcGGCCGUGGu -3' miRNA: 3'- cCGGAGC----UGCGa-CCGA-------------CuCCGGUACU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 51239 | 0.66 | 0.767979 |
Target: 5'- cGCCUgGACGCUccaGGC---GGCCGUGc -3' miRNA: 3'- cCGGAgCUGCGA---CCGacuCCGGUACu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 109075 | 0.66 | 0.749102 |
Target: 5'- cGCCUCGGCgaucaugccGUUGGCcaggucccgGAcgccGGCCAUGAg -3' miRNA: 3'- cCGGAGCUG---------CGACCGa--------CU----CCGGUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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