Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23838 | 3' | -59 | NC_005261.1 | + | 121174 | 0.66 | 0.777245 |
Target: 5'- gGGCgCUCGGUGCacggGGCcGGGGCCGg-- -3' miRNA: 3'- -CCG-GAGCUGCGa---CCGaCUCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 97137 | 0.66 | 0.777245 |
Target: 5'- cGGCCacgcUCGgagGCGCUGGCgccGGCCcgGc -3' miRNA: 3'- -CCGG----AGC---UGCGACCGacuCCGGuaCu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 13345 | 0.66 | 0.777245 |
Target: 5'- cGGCCagcggUCGGCGgaGGCUG-GGCgGc-- -3' miRNA: 3'- -CCGG-----AGCUGCgaCCGACuCCGgUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 90098 | 0.66 | 0.767979 |
Target: 5'- gGGCC-CGuuCGCcGGCUG-GGCCGa-- -3' miRNA: 3'- -CCGGaGCu-GCGaCCGACuCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 51239 | 0.66 | 0.767979 |
Target: 5'- cGCCUgGACGCUccaGGC---GGCCGUGc -3' miRNA: 3'- cCGGAgCUGCGA---CCGacuCCGGUACu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 133608 | 0.66 | 0.739508 |
Target: 5'- cGGCCcaccUCG-CGCUGGCgcuguGGGCCGc-- -3' miRNA: 3'- -CCGG----AGCuGCGACCGac---UCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 49194 | 0.67 | 0.690345 |
Target: 5'- aGGcCCUCGGCcgacaGCgagGGCggGAGGCCGg-- -3' miRNA: 3'- -CC-GGAGCUG-----CGa--CCGa-CUCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 117687 | 0.67 | 0.700307 |
Target: 5'- gGGCCcgcggCGAgGCcGGCccUGAGGCCGg-- -3' miRNA: 3'- -CCGGa----GCUgCGaCCG--ACUCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 28728 | 0.67 | 0.680335 |
Target: 5'- gGGCCUCGGCGCccuCcGAGGCCccaGAg -3' miRNA: 3'- -CCGGAGCUGCGaccGaCUCCGGua-CU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 31680 | 0.67 | 0.680335 |
Target: 5'- uGGCCgCGGCGCggcggcGGCUGAucgugaucgacGCCGUGGa -3' miRNA: 3'- -CCGGaGCUGCGa-----CCGACUc----------CGGUACU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 107739 | 0.67 | 0.680335 |
Target: 5'- cGCCUCGGcCGC-GGggGGGGCCAc-- -3' miRNA: 3'- cCGGAGCU-GCGaCCgaCUCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 121500 | 0.67 | 0.690345 |
Target: 5'- gGGCggCGGgGCgGGCaUGGGGCCGUcGAu -3' miRNA: 3'- -CCGgaGCUgCGaCCG-ACUCCGGUA-CU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 76865 | 0.67 | 0.690345 |
Target: 5'- cGCCU-GGCGCccGGCgagGAGGCCGa-- -3' miRNA: 3'- cCGGAgCUGCGa-CCGa--CUCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 91699 | 0.67 | 0.690345 |
Target: 5'- cGCCUgCGACaGCcGGCUGcaAGGCCGg-- -3' miRNA: 3'- cCGGA-GCUG-CGaCCGAC--UCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 30893 | 0.67 | 0.700307 |
Target: 5'- cGCC-CGA-GCUcgGGCUGGGGCCGc-- -3' miRNA: 3'- cCGGaGCUgCGA--CCGACUCCGGUacu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 2971 | 0.67 | 0.710214 |
Target: 5'- gGGCC-CGG-GCUgaGGCUGGGGCUcgGc -3' miRNA: 3'- -CCGGaGCUgCGA--CCGACUCCGGuaCu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 39805 | 0.67 | 0.710214 |
Target: 5'- cGGCCgcCGGCGCcaGGCUcuGGCCGUa- -3' miRNA: 3'- -CCGGa-GCUGCGa-CCGAcuCCGGUAcu -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 133215 | 0.67 | 0.710214 |
Target: 5'- cGCCgUCGAgGCcGaGCUGGGGCCcuacAUGGc -3' miRNA: 3'- cCGG-AGCUgCGaC-CGACUCCGG----UACU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 83847 | 0.67 | 0.720055 |
Target: 5'- gGGCCgCGGCcccGCUgGGCUG-GGCCGggccgGAc -3' miRNA: 3'- -CCGGaGCUG---CGA-CCGACuCCGGUa----CU- -5' |
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23838 | 3' | -59 | NC_005261.1 | + | 29693 | 0.67 | 0.720055 |
Target: 5'- uGCCgcaCGugGC-GGcCUGcguGGCCAUGAg -3' miRNA: 3'- cCGGa--GCugCGaCC-GACu--CCGGUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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