miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23838 3' -59 NC_005261.1 + 32324 0.66 0.729823
Target:  5'- cGGCCgCGGCGCccGGCgu-GGCC-UGGg -3'
miRNA:   3'- -CCGGaGCUGCGa-CCGacuCCGGuACU- -5'
23838 3' -59 NC_005261.1 + 32545 0.66 0.767979
Target:  5'- cGGCCgCGGCGCgGGCcGGcGCgCGUGGa -3'
miRNA:   3'- -CCGGaGCUGCGaCCGaCUcCG-GUACU- -5'
23838 3' -59 NC_005261.1 + 33604 0.7 0.520184
Target:  5'- cGGCgC-CGGCGCgGGCggcGGGGCCcgGGg -3'
miRNA:   3'- -CCG-GaGCUGCGaCCGa--CUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 33840 0.66 0.767979
Target:  5'- gGGCCcccUGGCGCUGGgc-GGGCCggGAg -3'
miRNA:   3'- -CCGGa--GCUGCGACCgacUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 36637 0.68 0.639991
Target:  5'- cGGCgCgaagcCGGCGCgcgGGCuUGGGGCCAg-- -3'
miRNA:   3'- -CCG-Ga----GCUGCGa--CCG-ACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 39805 0.67 0.710214
Target:  5'- cGGCCgcCGGCGCcaGGCUcuGGCCGUa- -3'
miRNA:   3'- -CCGGa-GCUGCGa-CCGAcuCCGGUAcu -5'
23838 3' -59 NC_005261.1 + 40226 0.7 0.529913
Target:  5'- aGCgUCGuCGUcucUGGCccgGGGGCCGUGAg -3'
miRNA:   3'- cCGgAGCuGCG---ACCGa--CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 44015 0.7 0.510526
Target:  5'- cGGCUUCGGCGC-GGCgGGcGGCCGc-- -3'
miRNA:   3'- -CCGGAGCUGCGaCCGaCU-CCGGUacu -5'
23838 3' -59 NC_005261.1 + 46078 0.7 0.517279
Target:  5'- cGCCUCGugGCcggacacgagcacgUacGGCcgGGGGCCGUGGu -3'
miRNA:   3'- cCGGAGCugCG--------------A--CCGa-CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 47459 0.66 0.758595
Target:  5'- cGGCC-CGcuuGCGCgggGGCUG-GGCgAUGu -3'
miRNA:   3'- -CCGGaGC---UGCGa--CCGACuCCGgUACu -5'
23838 3' -59 NC_005261.1 + 48305 0.68 0.619751
Target:  5'- aGGCCUCGggggGCGCgucgGGCccGGGCUcgGGg -3'
miRNA:   3'- -CCGGAGC----UGCGa---CCGacUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 48774 0.69 0.556496
Target:  5'- cGGCC-CGACgaGCUcGGCgaucgccggcuccgUGAGGCCGUGc -3'
miRNA:   3'- -CCGGaGCUG--CGA-CCG--------------ACUCCGGUACu -5'
23838 3' -59 NC_005261.1 + 49194 0.67 0.690345
Target:  5'- aGGcCCUCGGCcgacaGCgagGGCggGAGGCCGg-- -3'
miRNA:   3'- -CC-GGAGCUG-----CGa--CCGa-CUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 50921 0.66 0.757651
Target:  5'- cGCCUCGccggGCGCggGGCUccccugcuucuacGcGGCCGUGGu -3'
miRNA:   3'- cCGGAGC----UGCGa-CCGA-------------CuCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 51239 0.66 0.767979
Target:  5'- cGCCUgGACGCUccaGGC---GGCCGUGc -3'
miRNA:   3'- cCGGAgCUGCGA---CCGacuCCGGUACu -5'
23838 3' -59 NC_005261.1 + 51512 0.69 0.589477
Target:  5'- cGGCCagaugcUgGGCGCcgGGCUGGGGCUGUc- -3'
miRNA:   3'- -CCGG------AgCUGCGa-CCGACUCCGGUAcu -5'
23838 3' -59 NC_005261.1 + 51782 0.7 0.510526
Target:  5'- cGGCgUCGcccUGCUGGCcGuGGCCAUGc -3'
miRNA:   3'- -CCGgAGCu--GCGACCGaCuCCGGUACu -5'
23838 3' -59 NC_005261.1 + 53588 0.68 0.619751
Target:  5'- gGGCCggCGGCGCcccaGCggaccgacGAGGCCGUGGc -3'
miRNA:   3'- -CCGGa-GCUGCGac--CGa-------CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 55756 0.68 0.639991
Target:  5'- cGGCCUCGACGC-GcGCcGccGCCcgGAu -3'
miRNA:   3'- -CCGGAGCUGCGaC-CGaCucCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 57789 0.7 0.520184
Target:  5'- cGGCgUCG-CGCggcgGGCgcgcGaAGGCCGUGAa -3'
miRNA:   3'- -CCGgAGCuGCGa---CCGa---C-UCCGGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.