miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23838 3' -59 NC_005261.1 + 1174 0.66 0.739508
Target:  5'- cGGCCcgCGcCGC-GGCcGGGGCCggGGc -3'
miRNA:   3'- -CCGGa-GCuGCGaCCGaCUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 1836 0.71 0.491441
Target:  5'- cGGCCUCGGCGCgcgcgaaGGCgccGGGCCc--- -3'
miRNA:   3'- -CCGGAGCUGCGa------CCGac-UCCGGuacu -5'
23838 3' -59 NC_005261.1 + 2768 0.66 0.727876
Target:  5'- gGGCCUCGAgGCccgcccccgaggGGCUGccgccggcGGCCggGAg -3'
miRNA:   3'- -CCGGAGCUgCGa-----------CCGACu-------CCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 2971 0.67 0.710214
Target:  5'- gGGCC-CGG-GCUgaGGCUGGGGCUcgGc -3'
miRNA:   3'- -CCGGaGCUgCGA--CCGACUCCGGuaCu -5'
23838 3' -59 NC_005261.1 + 3919 0.68 0.62987
Target:  5'- cGCCgcCGGCGCcGGCcuccggGuAGGCCAUGGg -3'
miRNA:   3'- cCGGa-GCUGCGaCCGa-----C-UCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 4968 0.7 0.539708
Target:  5'- cGGCCgCGGCGUccuCUGGGGCCcgGAg -3'
miRNA:   3'- -CCGGaGCUGCGaccGACUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 5864 0.68 0.650106
Target:  5'- gGGUCUCGACgacggagagagGCUGGCUGGcucGGCUg--- -3'
miRNA:   3'- -CCGGAGCUG-----------CGACCGACU---CCGGuacu -5'
23838 3' -59 NC_005261.1 + 13345 0.66 0.777245
Target:  5'- cGGCCagcggUCGGCGgaGGCUG-GGCgGc-- -3'
miRNA:   3'- -CCGG-----AGCUGCgaCCGACuCCGgUacu -5'
23838 3' -59 NC_005261.1 + 14270 0.8 0.138336
Target:  5'- cGGCUUCGGgGCUggGGCUGGGGCCAa-- -3'
miRNA:   3'- -CCGGAGCUgCGA--CCGACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 16214 0.68 0.660207
Target:  5'- uGGCCUCGAgGCUcGGCcagcccucGGGGCgGUcGAc -3'
miRNA:   3'- -CCGGAGCUgCGA-CCGa-------CUCCGgUA-CU- -5'
23838 3' -59 NC_005261.1 + 21200 0.7 0.500943
Target:  5'- cGGCCgcgGACGCUGGCcccGGCCGcGAc -3'
miRNA:   3'- -CCGGag-CUGCGACCGacuCCGGUaCU- -5'
23838 3' -59 NC_005261.1 + 25277 0.66 0.749102
Target:  5'- cGCCgcgagggGGCGC-GGuCUGuGGCCGUGAg -3'
miRNA:   3'- cCGGag-----CUGCGaCC-GACuCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 28551 0.67 0.700307
Target:  5'- cGGCCcugcUCGACGCggcccgccgGGCcGAGGCgCGcGAg -3'
miRNA:   3'- -CCGG----AGCUGCGa--------CCGaCUCCG-GUaCU- -5'
23838 3' -59 NC_005261.1 + 28728 0.67 0.680335
Target:  5'- gGGCCUCGGCGCccuCcGAGGCCccaGAg -3'
miRNA:   3'- -CCGGAGCUGCGaccGaCUCCGGua-CU- -5'
23838 3' -59 NC_005261.1 + 29693 0.67 0.720055
Target:  5'- uGCCgcaCGugGC-GGcCUGcguGGCCAUGAg -3'
miRNA:   3'- cCGGa--GCugCGaCC-GACu--CCGGUACU- -5'
23838 3' -59 NC_005261.1 + 30784 0.72 0.410133
Target:  5'- cGGCCgCGGCGgUGgagguGCUGGGGCCGgagGAg -3'
miRNA:   3'- -CCGGaGCUGCgAC-----CGACUCCGGUa--CU- -5'
23838 3' -59 NC_005261.1 + 30893 0.67 0.700307
Target:  5'- cGCC-CGA-GCUcgGGCUGGGGCCGc-- -3'
miRNA:   3'- cCGGaGCUgCGA--CCGACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 31680 0.67 0.680335
Target:  5'- uGGCCgCGGCGCggcggcGGCUGAucgugaucgacGCCGUGGa -3'
miRNA:   3'- -CCGGaGCUGCGa-----CCGACUc----------CGGUACU- -5'
23838 3' -59 NC_005261.1 + 32063 0.67 0.670286
Target:  5'- uGGCCgCGcagaGCGCgGcGCUGGGGCUcgGGg -3'
miRNA:   3'- -CCGGaGC----UGCGaC-CGACUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 32148 0.68 0.639991
Target:  5'- gGGgCUCGGCGCgccGCUGcGGCCGg-- -3'
miRNA:   3'- -CCgGAGCUGCGac-CGACuCCGGUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.