miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23838 3' -59 NC_005261.1 + 133608 0.66 0.739508
Target:  5'- cGGCCcaccUCG-CGCUGGCgcuguGGGCCGc-- -3'
miRNA:   3'- -CCGG----AGCuGCGACCGac---UCCGGUacu -5'
23838 3' -59 NC_005261.1 + 133215 0.67 0.710214
Target:  5'- cGCCgUCGAgGCcGaGCUGGGGCCcuacAUGGc -3'
miRNA:   3'- cCGG-AGCUgCGaC-CGACUCCGG----UACU- -5'
23838 3' -59 NC_005261.1 + 132763 0.66 0.766111
Target:  5'- cGCCUUGuccagcacgccgucAUGCUGGagcgccccuucgccGAGGCCAUGAg -3'
miRNA:   3'- cCGGAGC--------------UGCGACCga------------CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 128864 0.7 0.549564
Target:  5'- cGCCUCGuCGCUgccgacgacgaGGCgGGGGCCggGUGGg -3'
miRNA:   3'- cCGGAGCuGCGA-----------CCGaCUCCGG--UACU- -5'
23838 3' -59 NC_005261.1 + 125873 0.72 0.401622
Target:  5'- cGGCCggggCGGCGCccuUGGCUGAaGGCgCcUGAg -3'
miRNA:   3'- -CCGGa---GCUGCG---ACCGACU-CCG-GuACU- -5'
23838 3' -59 NC_005261.1 + 125715 0.72 0.436325
Target:  5'- cGGCCgccgCGG-GCUcGGCUGGGGCCGc-- -3'
miRNA:   3'- -CCGGa---GCUgCGA-CCGACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 121985 0.69 0.569434
Target:  5'- cGCCgcccaGCUGGCgGAGGUCAUGGu -3'
miRNA:   3'- cCGGagcugCGACCGaCUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 121500 0.67 0.690345
Target:  5'- gGGCggCGGgGCgGGCaUGGGGCCGUcGAu -3'
miRNA:   3'- -CCGgaGCUgCGaCCG-ACUCCGGUA-CU- -5'
23838 3' -59 NC_005261.1 + 121437 0.67 0.690345
Target:  5'- gGGCggCGGgGCgGGCaUGGGGCCGUcGAu -3'
miRNA:   3'- -CCGgaGCUgCGaCCG-ACUCCGGUA-CU- -5'
23838 3' -59 NC_005261.1 + 121174 0.66 0.777245
Target:  5'- gGGCgCUCGGUGCacggGGCcGGGGCCGg-- -3'
miRNA:   3'- -CCG-GAGCUGCGa---CCGaCUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 120608 0.68 0.639991
Target:  5'- cGGCCUCGGCGCcguggGGCuccugcuggUGGcGGCCcUGu -3'
miRNA:   3'- -CCGGAGCUGCGa----CCG---------ACU-CCGGuACu -5'
23838 3' -59 NC_005261.1 + 118658 0.66 0.749102
Target:  5'- gGGCCgCG-CGCUcggGGCUGAGGgCGgcgGGc -3'
miRNA:   3'- -CCGGaGCuGCGA---CCGACUCCgGUa--CU- -5'
23838 3' -59 NC_005261.1 + 118402 0.68 0.62987
Target:  5'- cGGCCgCGggcgccgcagccGCGCUGGCUGucGCCGc-- -3'
miRNA:   3'- -CCGGaGC------------UGCGACCGACucCGGUacu -5'
23838 3' -59 NC_005261.1 + 118042 0.68 0.660207
Target:  5'- cGGCCgCGACGCccGcGCUGGcGGCCGcGGc -3'
miRNA:   3'- -CCGGaGCUGCGa-C-CGACU-CCGGUaCU- -5'
23838 3' -59 NC_005261.1 + 117687 0.67 0.700307
Target:  5'- gGGCCcgcggCGAgGCcGGCccUGAGGCCGg-- -3'
miRNA:   3'- -CCGGa----GCUgCGaCCG--ACUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 111457 0.66 0.739508
Target:  5'- aGCCg-GGCGCcGGC-GAGGCCAa-- -3'
miRNA:   3'- cCGGagCUGCGaCCGaCUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 110403 0.67 0.720055
Target:  5'- cGCUUCuACGcCUGcCUGcAGGCCAUGAu -3'
miRNA:   3'- cCGGAGcUGC-GACcGAC-UCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 109075 0.66 0.749102
Target:  5'- cGCCUCGGCgaucaugccGUUGGCcaggucccgGAcgccGGCCAUGAg -3'
miRNA:   3'- cCGGAGCUG---------CGACCGa--------CU----CCGGUACU- -5'
23838 3' -59 NC_005261.1 + 107739 0.67 0.680335
Target:  5'- cGCCUCGGcCGC-GGggGGGGCCAc-- -3'
miRNA:   3'- cCGGAGCU-GCGaCCgaCUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 107132 0.69 0.599547
Target:  5'- cGGCgaCGGCGCccacGGCcGcGGCCAUGGa -3'
miRNA:   3'- -CCGgaGCUGCGa---CCGaCuCCGGUACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.