miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 3' -57.6 NC_005261.1 + 1362 0.75 0.323332
Target:  5'- uCUCCcGCGGGCCCUG-GUCCGCGUc- -3'
miRNA:   3'- -GAGGaCGUUCGGGACgUAGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 1638 0.7 0.556141
Target:  5'- gCUCCc-CGAGCCCcaGCG-CCGCGCUCu -3'
miRNA:   3'- -GAGGacGUUCGGGa-CGUaGGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 2116 0.66 0.806459
Target:  5'- ----aGCAcGCCCUGCGcgCCgagcGCGCUCa -3'
miRNA:   3'- gaggaCGUuCGGGACGUa-GG----UGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 4170 0.66 0.778919
Target:  5'- --gCUGCAGGUCCgggcccGCGagcUUCGCGCUCu -3'
miRNA:   3'- gagGACGUUCGGGa-----CGU---AGGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 10020 0.68 0.690048
Target:  5'- -aCCggGCGGGCCUcGCGUCggggGCGCUCg -3'
miRNA:   3'- gaGGa-CGUUCGGGaCGUAGg---UGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 10168 0.71 0.486716
Target:  5'- -aCCUGCGacGGCuCCUGCcgCCucugcCGCUCg -3'
miRNA:   3'- gaGGACGU--UCG-GGACGuaGGu----GCGAG- -5'
23840 3' -57.6 NC_005261.1 + 10519 0.72 0.430641
Target:  5'- --gCUGCGGGCCCcGCGg-CGCGCUCg -3'
miRNA:   3'- gagGACGUUCGGGaCGUagGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 16986 0.69 0.634356
Target:  5'- -aCCUGCGGGUCCgcgaucagcgccaGCAUgucgcacgcggCCGCGCUCg -3'
miRNA:   3'- gaGGACGUUCGGGa------------CGUA-----------GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 18012 0.68 0.648854
Target:  5'- uUCCUGCGGGuCCCcGCua--GCGCUCc -3'
miRNA:   3'- gAGGACGUUC-GGGaCGuaggUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 28460 0.71 0.486716
Target:  5'- uCUCCcgGCGGGCaCgaGCcggCCACGCUCg -3'
miRNA:   3'- -GAGGa-CGUUCG-GgaCGua-GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 29754 0.67 0.73045
Target:  5'- cCUCCUGCAgAG-CCUGCGg-CGCGCg- -3'
miRNA:   3'- -GAGGACGU-UCgGGACGUagGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 30879 0.67 0.759869
Target:  5'- -gCC-GCcGGCCCUGCcgCCcgaGCUCg -3'
miRNA:   3'- gaGGaCGuUCGGGACGuaGGug-CGAG- -5'
23840 3' -57.6 NC_005261.1 + 31241 0.67 0.740356
Target:  5'- uUCCc-CGAGCCCUgGCGcCCgGCGCUCg -3'
miRNA:   3'- gAGGacGUUCGGGA-CGUaGG-UGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 33567 0.66 0.769457
Target:  5'- aCUCC-GCcAGCCCUGCcagCCcCGCg- -3'
miRNA:   3'- -GAGGaCGuUCGGGACGua-GGuGCGag -5'
23840 3' -57.6 NC_005261.1 + 34067 0.75 0.323332
Target:  5'- cCUUCUGCcuGgCCUGCAUCCGcCGCUg -3'
miRNA:   3'- -GAGGACGuuCgGGACGUAGGU-GCGAg -5'
23840 3' -57.6 NC_005261.1 + 51780 0.69 0.62814
Target:  5'- -gCCgGCGucGCCCUGCuggccguggCCAUGCUCg -3'
miRNA:   3'- gaGGaCGUu-CGGGACGua-------GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 58885 0.66 0.797429
Target:  5'- gUCCggGCGGGCCUcGCAggCGCGCg- -3'
miRNA:   3'- gAGGa-CGUUCGGGaCGUagGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 60398 0.73 0.369455
Target:  5'- cCUCCaugGCGccgggccggcccgGGCCCgggGCcgCCGCGCUCg -3'
miRNA:   3'- -GAGGa--CGU-------------UCGGGa--CGuaGGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 62125 0.81 0.12211
Target:  5'- gUCCUGCAGGCCCUGCGUCa--GCa- -3'
miRNA:   3'- gAGGACGUUCGGGACGUAGgugCGag -5'
23840 3' -57.6 NC_005261.1 + 62994 0.68 0.648854
Target:  5'- cCUCCaGCcGGCCCUcgGCggCCGCGCcCg -3'
miRNA:   3'- -GAGGaCGuUCGGGA--CGuaGGUGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.