miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 3' -57.6 NC_005261.1 + 134345 0.67 0.710385
Target:  5'- -aCC-GCAAGCCCccgcGCcgCCGCGCg- -3'
miRNA:   3'- gaGGaCGUUCGGGa---CGuaGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 133614 0.67 0.759869
Target:  5'- -aCCUcGCGcuGGCgCUGUGggCCGCGCUCg -3'
miRNA:   3'- gaGGA-CGU--UCGgGACGUa-GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 131065 0.72 0.421666
Target:  5'- -aCCUGCAGGCCgUGCGggacugCCugGC-Ca -3'
miRNA:   3'- gaGGACGUUCGGgACGUa-----GGugCGaG- -5'
23840 3' -57.6 NC_005261.1 + 130668 0.71 0.477122
Target:  5'- gCUCCUcgGCGAGcCCCUGC--CCGCGCg- -3'
miRNA:   3'- -GAGGA--CGUUC-GGGACGuaGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 130211 0.7 0.532944
Target:  5'- cCUCCUGCAggcggaagagcgucGGCCCgcucagGCG-CCGCGC-Ca -3'
miRNA:   3'- -GAGGACGU--------------UCGGGa-----CGUaGGUGCGaG- -5'
23840 3' -57.6 NC_005261.1 + 122991 0.68 0.652992
Target:  5'- cCUCCUGCAgGGCCaCUacggccgcggccgugGCGUCCGCGagcgUCg -3'
miRNA:   3'- -GAGGACGU-UCGG-GA---------------CGUAGGUGCg---AG- -5'
23840 3' -57.6 NC_005261.1 + 122584 0.67 0.720456
Target:  5'- gCUCCgccGCAgcGGCCUUGUAcgCCGCGUUg -3'
miRNA:   3'- -GAGGa--CGU--UCGGGACGUa-GGUGCGAg -5'
23840 3' -57.6 NC_005261.1 + 122485 0.8 0.142906
Target:  5'- uCUCCUGCAAGCgcgucUCUGUGUCCGgGCUCu -3'
miRNA:   3'- -GAGGACGUUCG-----GGACGUAGGUgCGAG- -5'
23840 3' -57.6 NC_005261.1 + 121914 0.73 0.404059
Target:  5'- -gUCUGCGcGCCgUGCGccgCCACGCUCu -3'
miRNA:   3'- gaGGACGUuCGGgACGUa--GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 120626 0.67 0.73045
Target:  5'- gCUCCUGCugguggcGGCCCUGUGccugCgGCGCa- -3'
miRNA:   3'- -GAGGACGu------UCGGGACGUa---GgUGCGag -5'
23840 3' -57.6 NC_005261.1 + 118952 0.66 0.797429
Target:  5'- -gCCgcgGCGcacguggccaaGGUCCUGCAcgCCGCGCUg -3'
miRNA:   3'- gaGGa--CGU-----------UCGGGACGUa-GGUGCGAg -5'
23840 3' -57.6 NC_005261.1 + 118191 0.67 0.720456
Target:  5'- -gCC-GCGGGCCCcGCGccugCCGCGCUg -3'
miRNA:   3'- gaGGaCGUUCGGGaCGUa---GGUGCGAg -5'
23840 3' -57.6 NC_005261.1 + 115898 0.66 0.776094
Target:  5'- cCUCCUccccgccgucgucaGCGccGGCCgCcGCGUCCGCGCg- -3'
miRNA:   3'- -GAGGA--------------CGU--UCGG-GaCGUAGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 113103 0.68 0.700245
Target:  5'- cCUCCUG-GAGCUCgGCAUggaCAUGCUCu -3'
miRNA:   3'- -GAGGACgUUCGGGaCGUAg--GUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 110416 0.66 0.797429
Target:  5'- -gCCUGCAGGCCaugauccgCUGCca-CGCGUUCc -3'
miRNA:   3'- gaGGACGUUCGG--------GACGuagGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 107174 0.75 0.308702
Target:  5'- cCUCCgucucgGCGgcguAGCCCUGCAgCCGCGCg- -3'
miRNA:   3'- -GAGGa-----CGU----UCGGGACGUaGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 106889 0.77 0.214933
Target:  5'- aCUCCUGC-AGCgCCUGCGucgUCCGCGC-Cg -3'
miRNA:   3'- -GAGGACGuUCG-GGACGU---AGGUGCGaG- -5'
23840 3' -57.6 NC_005261.1 + 106734 0.69 0.638499
Target:  5'- cCUCgUGCA-GCCCcgGCGccUCCGCGCcCg -3'
miRNA:   3'- -GAGgACGUuCGGGa-CGU--AGGUGCGaG- -5'
23840 3' -57.6 NC_005261.1 + 104293 0.68 0.648854
Target:  5'- -gCCUcGCAGGCCC-GCG--CGCGCUCa -3'
miRNA:   3'- gaGGA-CGUUCGGGaCGUagGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 103215 0.71 0.506171
Target:  5'- cCUCCUGCAggaagcgcgcgcAGUCCUccGcCGUCCGCGCg- -3'
miRNA:   3'- -GAGGACGU------------UCGGGA--C-GUAGGUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.