miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 3' -60.6 NC_005261.1 + 37170 0.67 0.623511
Target:  5'- gCGcGCuUGCGCCUgGGCgCUGcugGCGGCGc -3'
miRNA:   3'- -GCaCG-ACGCGGGgCCG-GACa--UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 46569 0.67 0.623511
Target:  5'- gCGcUGCUGCGagCgCGGCCUcGcGCGACAc -3'
miRNA:   3'- -GC-ACGACGCg-GgGCCGGA-CaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 31614 0.67 0.622512
Target:  5'- gCGUGCUGCuGCucgcgacgcgggaCCUGGCCUuccGCGGCGc -3'
miRNA:   3'- -GCACGACG-CG-------------GGGCCGGAca-UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 1395 0.67 0.603546
Target:  5'- --cGCcggGCGCCgCGGCCgcgGCGGCGg -3'
miRNA:   3'- gcaCGa--CGCGGgGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 129301 0.67 0.603546
Target:  5'- --cGCccccgGCGCCCCGcGCCUGcGCuGGCGc -3'
miRNA:   3'- gcaCGa----CGCGGGGC-CGGACaUG-CUGU- -5'
23841 3' -60.6 NC_005261.1 + 121377 0.67 0.593591
Target:  5'- -cUGCagGCGCCCCGcggcggcggcGCCUgcccgaGUGCGACGg -3'
miRNA:   3'- gcACGa-CGCGGGGC----------CGGA------CAUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 72445 0.67 0.593591
Target:  5'- cCG-GCggggGCGCCCgCGGCgaGcGCGGCGa -3'
miRNA:   3'- -GCaCGa---CGCGGG-GCCGgaCaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 133841 0.68 0.583662
Target:  5'- gCGUGC-GCGCCgUGGCCggcgcGcGCGACu -3'
miRNA:   3'- -GCACGaCGCGGgGCCGGa----CaUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 107878 0.68 0.583662
Target:  5'- gCGcGCUcGCGCCCgCGGCCcgcuUGUccGCGGCc -3'
miRNA:   3'- -GCaCGA-CGCGGG-GCCGG----ACA--UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 1449 0.68 0.583662
Target:  5'- gCG-GCgGCGCCUCGGC--GUGCGGCu -3'
miRNA:   3'- -GCaCGaCGCGGGGCCGgaCAUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 86102 0.68 0.573767
Target:  5'- uCGU-CgGCGCCCgGGCgucggagcgcgCUGUACGACGc -3'
miRNA:   3'- -GCAcGaCGCGGGgCCG-----------GACAUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 32162 0.68 0.563911
Target:  5'- --cGCUGCGgccgguguaCCUGGCCUGcggGCGGCGc -3'
miRNA:   3'- gcaCGACGCg--------GGGCCGGACa--UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 76920 0.68 0.538512
Target:  5'- gCGUGCUGgGCCgCCGcGUCgggaccaucguuacGUACGACGc -3'
miRNA:   3'- -GCACGACgCGG-GGC-CGGa-------------CAUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 133787 0.68 0.534638
Target:  5'- uCGUGCgGCGCaucccgCCCGGgCUGcucgACGGCGa -3'
miRNA:   3'- -GCACGaCGCG------GGGCCgGACa---UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 53538 0.68 0.534638
Target:  5'- cCGUGUUGCGCUcuUCGGCCgcgccGCGGCc -3'
miRNA:   3'- -GCACGACGCGG--GGCCGGaca--UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 96734 0.68 0.534638
Target:  5'- cCGgGCgcgGCGCgaguCCCGGCCUGggccGCGGCc -3'
miRNA:   3'- -GCaCGa--CGCG----GGGCCGGACa---UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 133052 0.68 0.534638
Target:  5'- aCGUGCUGCGCggcguuggCGGCgaGUACGuCAg -3'
miRNA:   3'- -GCACGACGCGgg------GCCGgaCAUGCuGU- -5'
23841 3' -60.6 NC_005261.1 + 71900 0.69 0.515423
Target:  5'- aGUGCUccGCGCCgCCGGCCaGcACGuCGu -3'
miRNA:   3'- gCACGA--CGCGG-GGCCGGaCaUGCuGU- -5'
23841 3' -60.6 NC_005261.1 + 85032 0.69 0.50592
Target:  5'- --cGCcGCGCCCCGGCC---ACGAUc -3'
miRNA:   3'- gcaCGaCGCGGGGCCGGacaUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 117984 0.69 0.50592
Target:  5'- --gGC-GCGCacaCCGGCCUG-ACGGCGg -3'
miRNA:   3'- gcaCGaCGCGg--GGCCGGACaUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.