miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 3' -60.6 NC_005261.1 + 53712 0.66 0.703013
Target:  5'- --cGC-GCGCCgCGGCCaGcUGCGGCGc -3'
miRNA:   3'- gcaCGaCGCGGgGCCGGaC-AUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 63380 0.66 0.683316
Target:  5'- uGUGCcggGuCGCCCUGGCCgugGU-CGaACAu -3'
miRNA:   3'- gCACGa--C-GCGGGGCCGGa--CAuGC-UGU- -5'
23841 3' -60.6 NC_005261.1 + 64057 0.66 0.673402
Target:  5'- gCGUGgUGCGCCaCCGGCUgccGcACGGu- -3'
miRNA:   3'- -GCACgACGCGG-GGCCGGa--CaUGCUgu -5'
23841 3' -60.6 NC_005261.1 + 71900 0.69 0.515423
Target:  5'- aGUGCUccGCGCCgCCGGCCaGcACGuCGu -3'
miRNA:   3'- gCACGA--CGCGG-GGCCGGaCaUGCuGU- -5'
23841 3' -60.6 NC_005261.1 + 72445 0.67 0.593591
Target:  5'- cCG-GCggggGCGCCCgCGGCgaGcGCGGCGa -3'
miRNA:   3'- -GCaCGa---CGCGGG-GCCGgaCaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 74069 0.73 0.306697
Target:  5'- --aGCUGCGCgacgcggCCCGGCUUGUGCG-CGa -3'
miRNA:   3'- gcaCGACGCG-------GGGCCGGACAUGCuGU- -5'
23841 3' -60.6 NC_005261.1 + 76672 0.69 0.477883
Target:  5'- cCGUGCUG-GCCCUcGCCg--ACGACGa -3'
miRNA:   3'- -GCACGACgCGGGGcCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 76920 0.68 0.538512
Target:  5'- gCGUGCUGgGCCgCCGcGUCgggaccaucguuacGUACGACGc -3'
miRNA:   3'- -GCACGACgCGG-GGC-CGGa-------------CAUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 77521 0.66 0.650493
Target:  5'- --cGCcGCGCCCCcgcccccgaugccgGGCUgGUACGGCGc -3'
miRNA:   3'- gcaCGaCGCGGGG--------------CCGGaCAUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 77575 0.7 0.450634
Target:  5'- --cGCcGCGCCCUGGCaccccggGUACGGCu -3'
miRNA:   3'- gcaCGaCGCGGGGCCGga-----CAUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 81061 0.66 0.653487
Target:  5'- aCGUGCUGCccGCCCaGGUCgugGUcACGAUc -3'
miRNA:   3'- -GCACGACG--CGGGgCCGGa--CA-UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 84282 0.72 0.32866
Target:  5'- gGUGCcgccgGCgGCCCCGGCCccgGCGGCGc -3'
miRNA:   3'- gCACGa----CG-CGGGGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 85032 0.69 0.50592
Target:  5'- --cGCcGCGCCCCGGCC---ACGAUc -3'
miRNA:   3'- gcaCGaCGCGGGGCCGGacaUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 86102 0.68 0.573767
Target:  5'- uCGU-CgGCGCCCgGGCgucggagcgcgCUGUACGACGc -3'
miRNA:   3'- -GCAcGaCGCGGGgCCG-----------GACAUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 88145 0.71 0.402164
Target:  5'- cCGcGCggggGCGCCCCGGCCgcgcagccgggccgGgGCGACGc -3'
miRNA:   3'- -GCaCGa---CGCGGGGCCGGa-------------CaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 88770 0.66 0.693189
Target:  5'- --cGCUGCGCuCCuCGGCcCUGgccgcCGGCGc -3'
miRNA:   3'- gcaCGACGCG-GG-GCCG-GACau---GCUGU- -5'
23841 3' -60.6 NC_005261.1 + 96734 0.68 0.534638
Target:  5'- cCGgGCgcgGCGCgaguCCCGGCCUGggccGCGGCc -3'
miRNA:   3'- -GCaCGa--CGCG----GGGCCGGACa---UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 98771 0.66 0.673402
Target:  5'- --cGCUGcCGCCgCCGGCCgccggccgcgcGUGCGAa- -3'
miRNA:   3'- gcaCGAC-GCGG-GGCCGGa----------CAUGCUgu -5'
23841 3' -60.6 NC_005261.1 + 107732 0.7 0.450634
Target:  5'- gCG-GCUGCGCCUCGGCCgcgGggGgGGCc -3'
miRNA:   3'- -GCaCGACGCGGGGCCGGa--Ca-UgCUGu -5'
23841 3' -60.6 NC_005261.1 + 107878 0.68 0.583662
Target:  5'- gCGcGCUcGCGCCCgCGGCCcgcuUGUccGCGGCc -3'
miRNA:   3'- -GCaCGA-CGCGGG-GCCGG----ACA--UGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.