miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 3' -60.6 NC_005261.1 + 1277 0.67 0.633507
Target:  5'- uGUGCcgGCGCCCaGGCCg--GCGGg- -3'
miRNA:   3'- gCACGa-CGCGGGgCCGGacaUGCUgu -5'
23841 3' -60.6 NC_005261.1 + 1395 0.67 0.603546
Target:  5'- --cGCcggGCGCCgCGGCCgcgGCGGCGg -3'
miRNA:   3'- gcaCGa--CGCGGgGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 1449 0.68 0.583662
Target:  5'- gCG-GCgGCGCCUCGGC--GUGCGGCu -3'
miRNA:   3'- -GCaCGaCGCGGGGCCGgaCAUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 2984 0.67 0.643501
Target:  5'- --gGCUGgGgCUCGGCCUG-GCGGCc -3'
miRNA:   3'- gcaCGACgCgGGGCCGGACaUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 3821 0.67 0.633507
Target:  5'- gCGcGCUGCcgcggGCCCgGGCgCUG-GCGGCAg -3'
miRNA:   3'- -GCaCGACG-----CGGGgCCG-GACaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 10099 0.72 0.351
Target:  5'- --cGCcGCGCCCCGGCagcGgcgGCGACAg -3'
miRNA:   3'- gcaCGaCGCGGGGCCGga-Ca--UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 10426 0.66 0.712781
Target:  5'- gGUGCUGUGCCCaCGGacgcgugCUGggaGGCGc -3'
miRNA:   3'- gCACGACGCGGG-GCCg------GACaugCUGU- -5'
23841 3' -60.6 NC_005261.1 + 21210 0.74 0.268041
Target:  5'- --cGCUG-GCCCCGGCCgcgACGGCGg -3'
miRNA:   3'- gcaCGACgCGGGGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 29281 0.7 0.440857
Target:  5'- cCGcUGCUGaCGCCCUccggcgaGGCCUGgccCGGCAg -3'
miRNA:   3'- -GC-ACGAC-GCGGGG-------CCGGACau-GCUGU- -5'
23841 3' -60.6 NC_005261.1 + 29940 0.73 0.32145
Target:  5'- --cGCUGCGCUgCGGCCUGccGCGAg- -3'
miRNA:   3'- gcaCGACGCGGgGCCGGACa-UGCUgu -5'
23841 3' -60.6 NC_005261.1 + 31086 0.69 0.477883
Target:  5'- gCGUGCUGgGCCCCauGCCgcccgGCGGCc -3'
miRNA:   3'- -GCACGACgCGGGGc-CGGaca--UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 31614 0.67 0.622512
Target:  5'- gCGUGCUGCuGCucgcgacgcgggaCCUGGCCUuccGCGGCGc -3'
miRNA:   3'- -GCACGACG-CG-------------GGGCCGGAca-UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 31803 0.76 0.196817
Target:  5'- aGUGCgccGCGCgCUGGCCUGaGCGGCGc -3'
miRNA:   3'- gCACGa--CGCGgGGCCGGACaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 32162 0.68 0.563911
Target:  5'- --cGCUGCGgccgguguaCCUGGCCUGcggGCGGCGc -3'
miRNA:   3'- gcaCGACGCg--------GGGCCGGACa--UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 37170 0.67 0.623511
Target:  5'- gCGcGCuUGCGCCUgGGCgCUGcugGCGGCGc -3'
miRNA:   3'- -GCaCG-ACGCGGGgCCG-GACa--UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 44581 0.7 0.432949
Target:  5'- cCGUGCUGCGCgUCCGGCgCUu--CGGCu -3'
miRNA:   3'- -GCACGACGCG-GGGCCG-GAcauGCUGu -5'
23841 3' -60.6 NC_005261.1 + 46272 0.67 0.633507
Target:  5'- cCGUGUccccgggGCGCUCUGGCCgGgcaACGGCGc -3'
miRNA:   3'- -GCACGa------CGCGGGGCCGGaCa--UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 46569 0.67 0.623511
Target:  5'- gCGcUGCUGCGagCgCGGCCUcGcGCGACAc -3'
miRNA:   3'- -GC-ACGACGCg-GgGCCGGA-CaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 52226 0.67 0.643501
Target:  5'- --cGCgGCGCUgCGGCCgGUACGGu- -3'
miRNA:   3'- gcaCGaCGCGGgGCCGGaCAUGCUgu -5'
23841 3' -60.6 NC_005261.1 + 53538 0.68 0.534638
Target:  5'- cCGUGUUGCGCUcuUCGGCCgcgccGCGGCc -3'
miRNA:   3'- -GCACGACGCGG--GGCCGGaca--UGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.