Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23841 | 3' | -60.6 | NC_005261.1 | + | 31803 | 0.76 | 0.196817 |
Target: 5'- aGUGCgccGCGCgCUGGCCUGaGCGGCGc -3' miRNA: 3'- gCACGa--CGCGgGGCCGGACaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 21210 | 0.74 | 0.268041 |
Target: 5'- --cGCUG-GCCCCGGCCgcgACGGCGg -3' miRNA: 3'- gcaCGACgCGGGGCCGGacaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 124275 | 0.73 | 0.2938 |
Target: 5'- --cGC-GCGCCCCGGCC---GCGACAa -3' miRNA: 3'- gcaCGaCGCGGGGCCGGacaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 74069 | 0.73 | 0.306697 |
Target: 5'- --aGCUGCGCgacgcggCCCGGCUUGUGCG-CGa -3' miRNA: 3'- gcaCGACGCG-------GGGCCGGACAUGCuGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 29940 | 0.73 | 0.32145 |
Target: 5'- --cGCUGCGCUgCGGCCUGccGCGAg- -3' miRNA: 3'- gcaCGACGCGGgGCCGGACa-UGCUgu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 84282 | 0.72 | 0.32866 |
Target: 5'- gGUGCcgccgGCgGCCCCGGCCccgGCGGCGc -3' miRNA: 3'- gCACGa----CG-CGGGGCCGGacaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 10099 | 0.72 | 0.351 |
Target: 5'- --cGCcGCGCCCCGGCagcGgcgGCGACAg -3' miRNA: 3'- gcaCGaCGCGGGGCCGga-Ca--UGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 88145 | 0.71 | 0.402164 |
Target: 5'- cCGcGCggggGCGCCCCGGCCgcgcagccgggccgGgGCGACGc -3' miRNA: 3'- -GCaCGa---CGCGGGGCCGGa-------------CaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 44581 | 0.7 | 0.432949 |
Target: 5'- cCGUGCUGCGCgUCCGGCgCUu--CGGCu -3' miRNA: 3'- -GCACGACGCG-GGGCCG-GAcauGCUGu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 29281 | 0.7 | 0.440857 |
Target: 5'- cCGcUGCUGaCGCCCUccggcgaGGCCUGgccCGGCAg -3' miRNA: 3'- -GC-ACGAC-GCGGGG-------CCGGACau-GCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 107732 | 0.7 | 0.450634 |
Target: 5'- gCG-GCUGCGCCUCGGCCgcgGggGgGGCc -3' miRNA: 3'- -GCaCGACGCGGGGCCGGa--Ca-UgCUGu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 77575 | 0.7 | 0.450634 |
Target: 5'- --cGCcGCGCCCUGGCaccccggGUACGGCu -3' miRNA: 3'- gcaCGaCGCGGGGCCGga-----CAUGCUGu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 31086 | 0.69 | 0.477883 |
Target: 5'- gCGUGCUGgGCCCCauGCCgcccgGCGGCc -3' miRNA: 3'- -GCACGACgCGGGGc-CGGaca--UGCUGu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 76672 | 0.69 | 0.477883 |
Target: 5'- cCGUGCUG-GCCCUcGCCg--ACGACGa -3' miRNA: 3'- -GCACGACgCGGGGcCGGacaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 109771 | 0.69 | 0.487146 |
Target: 5'- gCGUcGCcgucucggGCGUCCCGGCCgcUGcUGCGACGg -3' miRNA: 3'- -GCA-CGa-------CGCGGGGCCGG--AC-AUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 117984 | 0.69 | 0.50592 |
Target: 5'- --gGC-GCGCacaCCGGCCUG-ACGGCGg -3' miRNA: 3'- gcaCGaCGCGg--GGCCGGACaUGCUGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 85032 | 0.69 | 0.50592 |
Target: 5'- --cGCcGCGCCCCGGCC---ACGAUc -3' miRNA: 3'- gcaCGaCGCGGGGCCGGacaUGCUGu -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 71900 | 0.69 | 0.515423 |
Target: 5'- aGUGCUccGCGCCgCCGGCCaGcACGuCGu -3' miRNA: 3'- gCACGA--CGCGG-GGCCGGaCaUGCuGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 133052 | 0.68 | 0.534638 |
Target: 5'- aCGUGCUGCGCggcguuggCGGCgaGUACGuCAg -3' miRNA: 3'- -GCACGACGCGgg------GCCGgaCAUGCuGU- -5' |
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23841 | 3' | -60.6 | NC_005261.1 | + | 133787 | 0.68 | 0.534638 |
Target: 5'- uCGUGCgGCGCaucccgCCCGGgCUGcucgACGGCGa -3' miRNA: 3'- -GCACGaCGCG------GGGCCgGACa---UGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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