miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 3' -60.6 NC_005261.1 + 131797 0.66 0.712781
Target:  5'- --cGCcGCGCCcgCCGcGCCUG-ACGGCGc -3'
miRNA:   3'- gcaCGaCGCGG--GGC-CGGACaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 31086 0.69 0.477883
Target:  5'- gCGUGCUGgGCCCCauGCCgcccgGCGGCc -3'
miRNA:   3'- -GCACGACgCGGGGc-CGGaca--UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 76672 0.69 0.477883
Target:  5'- cCGUGCUG-GCCCUcGCCg--ACGACGa -3'
miRNA:   3'- -GCACGACgCGGGGcCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 109771 0.69 0.487146
Target:  5'- gCGUcGCcgucucggGCGUCCCGGCCgcUGcUGCGACGg -3'
miRNA:   3'- -GCA-CGa-------CGCGGGGCCGG--AC-AUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 85032 0.69 0.50592
Target:  5'- --cGCcGCGCCCCGGCC---ACGAUc -3'
miRNA:   3'- gcaCGaCGCGGGGCCGGacaUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 117984 0.69 0.50592
Target:  5'- --gGC-GCGCacaCCGGCCUG-ACGGCGg -3'
miRNA:   3'- gcaCGaCGCGg--GGCCGGACaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 71900 0.69 0.515423
Target:  5'- aGUGCUccGCGCCgCCGGCCaGcACGuCGu -3'
miRNA:   3'- gCACGA--CGCGG-GGCCGGaCaUGCuGU- -5'
23841 3' -60.6 NC_005261.1 + 53538 0.68 0.534638
Target:  5'- cCGUGUUGCGCUcuUCGGCCgcgccGCGGCc -3'
miRNA:   3'- -GCACGACGCGG--GGCCGGaca--UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 133052 0.68 0.534638
Target:  5'- aCGUGCUGCGCggcguuggCGGCgaGUACGuCAg -3'
miRNA:   3'- -GCACGACGCGgg------GCCGgaCAUGCuGU- -5'
23841 3' -60.6 NC_005261.1 + 107732 0.7 0.450634
Target:  5'- gCG-GCUGCGCCUCGGCCgcgGggGgGGCc -3'
miRNA:   3'- -GCaCGACGCGGGGCCGGa--Ca-UgCUGu -5'
23841 3' -60.6 NC_005261.1 + 77575 0.7 0.450634
Target:  5'- --cGCcGCGCCCUGGCaccccggGUACGGCu -3'
miRNA:   3'- gcaCGaCGCGGGGCCGga-----CAUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 29281 0.7 0.440857
Target:  5'- cCGcUGCUGaCGCCCUccggcgaGGCCUGgccCGGCAg -3'
miRNA:   3'- -GC-ACGAC-GCGGGG-------CCGGACau-GCUGU- -5'
23841 3' -60.6 NC_005261.1 + 21210 0.74 0.268041
Target:  5'- --cGCUG-GCCCCGGCCgcgACGGCGg -3'
miRNA:   3'- gcaCGACgCGGGGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 124275 0.73 0.2938
Target:  5'- --cGC-GCGCCCCGGCC---GCGACAa -3'
miRNA:   3'- gcaCGaCGCGGGGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 74069 0.73 0.306697
Target:  5'- --aGCUGCGCgacgcggCCCGGCUUGUGCG-CGa -3'
miRNA:   3'- gcaCGACGCG-------GGGCCGGACAUGCuGU- -5'
23841 3' -60.6 NC_005261.1 + 29940 0.73 0.32145
Target:  5'- --cGCUGCGCUgCGGCCUGccGCGAg- -3'
miRNA:   3'- gcaCGACGCGGgGCCGGACa-UGCUgu -5'
23841 3' -60.6 NC_005261.1 + 84282 0.72 0.32866
Target:  5'- gGUGCcgccgGCgGCCCCGGCCccgGCGGCGc -3'
miRNA:   3'- gCACGa----CG-CGGGGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 10099 0.72 0.351
Target:  5'- --cGCcGCGCCCCGGCagcGgcgGCGACAg -3'
miRNA:   3'- gcaCGaCGCGGGGCCGga-Ca--UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 88145 0.71 0.402164
Target:  5'- cCGcGCggggGCGCCCCGGCCgcgcagccgggccgGgGCGACGc -3'
miRNA:   3'- -GCaCGa---CGCGGGGCCGGa-------------CaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 44581 0.7 0.432949
Target:  5'- cCGUGCUGCGCgUCCGGCgCUu--CGGCu -3'
miRNA:   3'- -GCACGACGCG-GGGCCG-GAcauGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.