miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 3' -60.6 NC_005261.1 + 133841 0.68 0.583662
Target:  5'- gCGUGC-GCGCCgUGGCCggcgcGcGCGACu -3'
miRNA:   3'- -GCACGaCGCGGgGCCGGa----CaUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 133787 0.68 0.534638
Target:  5'- uCGUGCgGCGCaucccgCCCGGgCUGcucgACGGCGa -3'
miRNA:   3'- -GCACGaCGCG------GGGCCgGACa---UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 133052 0.68 0.534638
Target:  5'- aCGUGCUGCGCggcguuggCGGCgaGUACGuCAg -3'
miRNA:   3'- -GCACGACGCGgg------GCCGgaCAUGCuGU- -5'
23841 3' -60.6 NC_005261.1 + 131797 0.66 0.712781
Target:  5'- --cGCcGCGCCcgCCGcGCCUG-ACGGCGc -3'
miRNA:   3'- gcaCGaCGCGG--GGC-CGGACaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 131740 0.66 0.673402
Target:  5'- gGUGCUGCacgcggacgGCaCgCCGGCCgGcGCGGCGg -3'
miRNA:   3'- gCACGACG---------CG-G-GGCCGGaCaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 130837 0.66 0.68727
Target:  5'- cCGUGCgcucaaccuugcgcGCGCgCCCGGCCgGgcgccGCGGCc -3'
miRNA:   3'- -GCACGa-------------CGCG-GGGCCGGaCa----UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 129301 0.67 0.603546
Target:  5'- --cGCccccgGCGCCCCGcGCCUGcGCuGGCGc -3'
miRNA:   3'- gcaCGa----CGCGGGGC-CGGACaUG-CUGU- -5'
23841 3' -60.6 NC_005261.1 + 124275 0.73 0.2938
Target:  5'- --cGC-GCGCCCCGGCC---GCGACAa -3'
miRNA:   3'- gcaCGaCGCGGGGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 121377 0.67 0.593591
Target:  5'- -cUGCagGCGCCCCGcggcggcggcGCCUgcccgaGUGCGACGg -3'
miRNA:   3'- gcACGa-CGCGGGGC----------CGGA------CAUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 118815 0.66 0.693189
Target:  5'- gCGU-CUGCGCCCUGGgC---GCGGCAc -3'
miRNA:   3'- -GCAcGACGCGGGGCCgGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 118609 0.66 0.663457
Target:  5'- uCGcGCUGUcggccguuGCCCUGGCCgccGCGGCGg -3'
miRNA:   3'- -GCaCGACG--------CGGGGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 117984 0.69 0.50592
Target:  5'- --gGC-GCGCacaCCGGCCUG-ACGGCGg -3'
miRNA:   3'- gcaCGaCGCGg--GGCCGGACaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 111921 0.66 0.712781
Target:  5'- uGUGC-GCG-CUCGGCCUGcaguCGGCGc -3'
miRNA:   3'- gCACGaCGCgGGGCCGGACau--GCUGU- -5'
23841 3' -60.6 NC_005261.1 + 109771 0.69 0.487146
Target:  5'- gCGUcGCcgucucggGCGUCCCGGCCgcUGcUGCGACGg -3'
miRNA:   3'- -GCA-CGa-------CGCGGGGCCGG--AC-AUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 108408 0.67 0.643501
Target:  5'- --aGCcGCGCCaCCGcGCCUGcgugcACGGCAa -3'
miRNA:   3'- gcaCGaCGCGG-GGC-CGGACa----UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 107878 0.68 0.583662
Target:  5'- gCGcGCUcGCGCCCgCGGCCcgcuUGUccGCGGCc -3'
miRNA:   3'- -GCaCGA-CGCGGG-GCCGG----ACA--UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 107732 0.7 0.450634
Target:  5'- gCG-GCUGCGCCUCGGCCgcgGggGgGGCc -3'
miRNA:   3'- -GCaCGACGCGGGGCCGGa--Ca-UgCUGu -5'
23841 3' -60.6 NC_005261.1 + 98771 0.66 0.673402
Target:  5'- --cGCUGcCGCCgCCGGCCgccggccgcgcGUGCGAa- -3'
miRNA:   3'- gcaCGAC-GCGG-GGCCGGa----------CAUGCUgu -5'
23841 3' -60.6 NC_005261.1 + 96734 0.68 0.534638
Target:  5'- cCGgGCgcgGCGCgaguCCCGGCCUGggccGCGGCc -3'
miRNA:   3'- -GCaCGa--CGCG----GGGCCGGACa---UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 88770 0.66 0.693189
Target:  5'- --cGCUGCGCuCCuCGGCcCUGgccgcCGGCGc -3'
miRNA:   3'- gcaCGACGCG-GG-GCCG-GACau---GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.