miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 5' -55.9 NC_005261.1 + 118814 0.79 0.234024
Target:  5'- gGCGUCUGCgcCCUGGGC-GCGGCaCUg -3'
miRNA:   3'- aUGCAGAUGaaGGACCCGaUGCCG-GG- -5'
23841 5' -55.9 NC_005261.1 + 127898 0.76 0.365484
Target:  5'- -cCGUCggGCccgggCCUGGGCUugGGCUCg -3'
miRNA:   3'- auGCAGa-UGaa---GGACCCGAugCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 135641 0.75 0.39039
Target:  5'- aUGCG-CUGCUaCCUgcgcGGGCgcggGCGGCCCu -3'
miRNA:   3'- -AUGCaGAUGAaGGA----CCCGa---UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 120408 0.74 0.461947
Target:  5'- gGCGUCUGCgcugagcggCCUGGGCUggugaacaugcGCGGCg- -3'
miRNA:   3'- aUGCAGAUGaa-------GGACCCGA-----------UGCCGgg -5'
23841 5' -55.9 NC_005261.1 + 99569 0.71 0.611329
Target:  5'- gGCGUCguaGCU--CUGGGcCUGCGcGCCCa -3'
miRNA:   3'- aUGCAGa--UGAagGACCC-GAUGC-CGGG- -5'
23841 5' -55.9 NC_005261.1 + 4810 0.71 0.620631
Target:  5'- gGCGUCaACUUCCuccgcguUGGGCgcagGCGGCg- -3'
miRNA:   3'- aUGCAGaUGAAGG-------ACCCGa---UGCCGgg -5'
23841 5' -55.9 NC_005261.1 + 73462 0.71 0.642352
Target:  5'- cGCGUCcGCgcgcccccCCUGGGCcGCGGCgCg -3'
miRNA:   3'- aUGCAGaUGaa------GGACCCGaUGCCGgG- -5'
23841 5' -55.9 NC_005261.1 + 104671 0.71 0.652688
Target:  5'- gGCGUgUGCUgcggcagcgCCUGGGCcACcGCCCc -3'
miRNA:   3'- aUGCAgAUGAa--------GGACCCGaUGcCGGG- -5'
23841 5' -55.9 NC_005261.1 + 16036 0.7 0.683559
Target:  5'- aGCuUCUucgcCUUCUUGGGCaGCGGgCCCg -3'
miRNA:   3'- aUGcAGAu---GAAGGACCCGaUGCC-GGG- -5'
23841 5' -55.9 NC_005261.1 + 88846 0.7 0.683559
Target:  5'- gGCGUCgGCUaCCUGGGCcGC-GCCUc -3'
miRNA:   3'- aUGCAGaUGAaGGACCCGaUGcCGGG- -5'
23841 5' -55.9 NC_005261.1 + 115414 0.7 0.693775
Target:  5'- cGCGggcgGCagCCgGGGCcGCGGCCCg -3'
miRNA:   3'- aUGCaga-UGaaGGaCCCGaUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 94860 0.69 0.71404
Target:  5'- gGCGcUCgcgcACggCCcGGGCggGCGGCCCg -3'
miRNA:   3'- aUGC-AGa---UGaaGGaCCCGa-UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 62293 0.69 0.734018
Target:  5'- cACGUCgGCg-CCgcgcGGGCgcgcgGCGGCCCc -3'
miRNA:   3'- aUGCAGaUGaaGGa---CCCGa----UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 118909 0.69 0.743877
Target:  5'- cUGCGUCUGggUCCggcgccgcGGGC-GCGGCgCCg -3'
miRNA:   3'- -AUGCAGAUgaAGGa-------CCCGaUGCCG-GG- -5'
23841 5' -55.9 NC_005261.1 + 90876 0.69 0.753636
Target:  5'- -cCGUCUGCgcgCUGGGCgACGGCa- -3'
miRNA:   3'- auGCAGAUGaagGACCCGaUGCCGgg -5'
23841 5' -55.9 NC_005261.1 + 111602 0.69 0.763286
Target:  5'- cGCGgaguggGCgcggCUGGGCUGCGGCgCCg -3'
miRNA:   3'- aUGCaga---UGaag-GACCCGAUGCCG-GG- -5'
23841 5' -55.9 NC_005261.1 + 68812 0.68 0.772816
Target:  5'- cGCGgacCcACaacgCCUGGGCcgugGCGGCCCc -3'
miRNA:   3'- aUGCa--GaUGaa--GGACCCGa---UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 25150 0.68 0.772816
Target:  5'- aGCGUCcucACUUCCcGGG--GCGGCCg -3'
miRNA:   3'- aUGCAGa--UGAAGGaCCCgaUGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 96748 0.68 0.772816
Target:  5'- --aGUCc-CggCCUGGGCcGCGGCCUu -3'
miRNA:   3'- augCAGauGaaGGACCCGaUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 7647 0.67 0.817488
Target:  5'- cGCGUCUGCUuuucgcuUCaaGcGGCcGCGGCCg -3'
miRNA:   3'- aUGCAGAUGA-------AGgaC-CCGaUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.