miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 5' -55.9 NC_005261.1 + 3656 0.67 0.818361
Target:  5'- cGCGUCUggagcgcaggccGCggCCggcaGGCcGCGGCCCg -3'
miRNA:   3'- aUGCAGA------------UGaaGGac--CCGaUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 4810 0.71 0.620631
Target:  5'- gGCGUCaACUUCCuccgcguUGGGCgcagGCGGCg- -3'
miRNA:   3'- aUGCAGaUGAAGG-------ACCCGa---UGCCGgg -5'
23841 5' -55.9 NC_005261.1 + 4844 0.67 0.818361
Target:  5'- gGCGUCcGCgccgcagCCUcaaGGGCgGCGGCCa -3'
miRNA:   3'- aUGCAGaUGaa-----GGA---CCCGaUGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 7647 0.67 0.817488
Target:  5'- cGCGUCUGCUuuucgcuUCaaGcGGCcGCGGCCg -3'
miRNA:   3'- aUGCAGAUGA-------AGgaC-CCGaUGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 13924 0.66 0.867243
Target:  5'- cGCGaUCUGCacCCcGGucgcGUUGCGGCCCa -3'
miRNA:   3'- aUGC-AGAUGaaGGaCC----CGAUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 16036 0.7 0.683559
Target:  5'- aGCuUCUucgcCUUCUUGGGCaGCGGgCCCg -3'
miRNA:   3'- aUGcAGAu---GAAGGACCCGaUGCC-GGG- -5'
23841 5' -55.9 NC_005261.1 + 19937 0.66 0.874673
Target:  5'- -uCG-CUAgcgUCCUGGGCgggggugggGCGGCCUc -3'
miRNA:   3'- auGCaGAUga-AGGACCCGa--------UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 23481 0.66 0.895612
Target:  5'- gGCGagUGCgcgggcccgCCUGGGCaggcGCGgGCCCu -3'
miRNA:   3'- aUGCagAUGaa-------GGACCCGa---UGC-CGGG- -5'
23841 5' -55.9 NC_005261.1 + 25150 0.68 0.772816
Target:  5'- aGCGUCcucACUUCCcGGG--GCGGCCg -3'
miRNA:   3'- aUGCAGa--UGAAGGaCCCgaUGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 39785 0.66 0.88188
Target:  5'- gACGUCg----CCgggGGGCggcGCGGCCg -3'
miRNA:   3'- aUGCAGaugaaGGa--CCCGa--UGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 51062 0.67 0.826986
Target:  5'- cACGgcgGCUUUCUcGGCguacACGGCCCu -3'
miRNA:   3'- aUGCagaUGAAGGAcCCGa---UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 62026 0.67 0.843684
Target:  5'- -cCGUCUGCcgUCCUcccGcGGCU-CGGCCg -3'
miRNA:   3'- auGCAGAUGa-AGGA---C-CCGAuGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 62293 0.69 0.734018
Target:  5'- cACGUCgGCg-CCgcgcGGGCgcgcgGCGGCCCc -3'
miRNA:   3'- aUGCAGaUGaaGGa---CCCGa----UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 68812 0.68 0.772816
Target:  5'- cGCGgacCcACaacgCCUGGGCcgugGCGGCCCc -3'
miRNA:   3'- aUGCa--GaUGaa--GGACCCGa---UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 73462 0.71 0.642352
Target:  5'- cGCGUCcGCgcgcccccCCUGGGCcGCGGCgCg -3'
miRNA:   3'- aUGCAGaUGaa------GGACCCGaUGCCGgG- -5'
23841 5' -55.9 NC_005261.1 + 75972 0.67 0.843684
Target:  5'- cACGcagCU-CUUCCcGGGC-GCGGCCg -3'
miRNA:   3'- aUGCa--GAuGAAGGaCCCGaUGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 77683 0.66 0.902127
Target:  5'- cGCGg--ACgggCC-GGGCUacgACGGCCCc -3'
miRNA:   3'- aUGCagaUGaa-GGaCCCGA---UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 83807 0.67 0.858044
Target:  5'- gUACGUCUGCaccugcccgaagaUgggagcaUCCgcuggcGGGCcGCGGCCCc -3'
miRNA:   3'- -AUGCAGAUG-------------A-------AGGa-----CCCGaUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 88846 0.7 0.683559
Target:  5'- gGCGUCgGCUaCCUGGGCcGC-GCCUc -3'
miRNA:   3'- aUGCAGaUGAaGGACCCGaUGcCGGG- -5'
23841 5' -55.9 NC_005261.1 + 90876 0.69 0.753636
Target:  5'- -cCGUCUGCgcgCUGGGCgACGGCa- -3'
miRNA:   3'- auGCAGAUGaagGACCCGaUGCCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.