Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23841 | 5' | -55.9 | NC_005261.1 | + | 135641 | 0.75 | 0.39039 |
Target: 5'- aUGCG-CUGCUaCCUgcgcGGGCgcggGCGGCCCu -3' miRNA: 3'- -AUGCaGAUGAaGGA----CCCGa---UGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 135063 | 0.67 | 0.835429 |
Target: 5'- aGCGgcccgCcGCuUUCCggcggcGGGCUcGCGGCCCg -3' miRNA: 3'- aUGCa----GaUG-AAGGa-----CCCGA-UGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 133351 | 0.66 | 0.893611 |
Target: 5'- cGCGgcgCUGCcgCgCaGGGCUucggcugccugcgcGCGGCCCa -3' miRNA: 3'- aUGCa--GAUGaaG-GaCCCGA--------------UGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 127898 | 0.76 | 0.365484 |
Target: 5'- -cCGUCggGCccgggCCUGGGCUugGGCUCg -3' miRNA: 3'- auGCAGa-UGaa---GGACCCGAugCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 123896 | 0.67 | 0.859598 |
Target: 5'- cGCGgaagGCcgCCgcugUGGGgUGCGGCCCg -3' miRNA: 3'- aUGCaga-UGaaGG----ACCCgAUGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 120601 | 0.66 | 0.902127 |
Target: 5'- -uCGcCUGCggCCUcggcgccgugGGGCUccugcuggugGCGGCCCu -3' miRNA: 3'- auGCaGAUGaaGGA----------CCCGA----------UGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 120408 | 0.74 | 0.461947 |
Target: 5'- gGCGUCUGCgcugagcggCCUGGGCUggugaacaugcGCGGCg- -3' miRNA: 3'- aUGCAGAUGaa-------GGACCCGA-----------UGCCGgg -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 118984 | 0.67 | 0.859598 |
Target: 5'- cGCGcUgUGCUUCUgcgucgGGGcCUGCugGGCCCg -3' miRNA: 3'- aUGC-AgAUGAAGGa-----CCC-GAUG--CCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 118909 | 0.69 | 0.743877 |
Target: 5'- cUGCGUCUGggUCCggcgccgcGGGC-GCGGCgCCg -3' miRNA: 3'- -AUGCAGAUgaAGGa-------CCCGaUGCCG-GG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 118814 | 0.79 | 0.234024 |
Target: 5'- gGCGUCUGCgcCCUGGGC-GCGGCaCUg -3' miRNA: 3'- aUGCAGAUGaaGGACCCGaUGCCG-GG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 118343 | 0.67 | 0.85491 |
Target: 5'- cUGCGggCUGCUccucggCCUcucggccgggcgcugGGGCgcGCGGCCCg -3' miRNA: 3'- -AUGCa-GAUGAa-----GGA---------------CCCGa-UGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 118172 | 0.66 | 0.888862 |
Target: 5'- gGCGgg-GCUUgccgUCUGGGCcGCGGgCCCc -3' miRNA: 3'- aUGCagaUGAA----GGACCCGaUGCC-GGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 117912 | 0.67 | 0.85491 |
Target: 5'- aGCGgCUGCgcgggaacgaaggCC--GGCUGCGGCCCg -3' miRNA: 3'- aUGCaGAUGaa-----------GGacCCGAUGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 115414 | 0.7 | 0.693775 |
Target: 5'- cGCGggcgGCagCCgGGGCcGCGGCCCg -3' miRNA: 3'- aUGCaga-UGaaGGaCCCGaUGCCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 111602 | 0.69 | 0.763286 |
Target: 5'- cGCGgaguggGCgcggCUGGGCUGCGGCgCCg -3' miRNA: 3'- aUGCaga---UGaag-GACCCGAUGCCG-GG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 110244 | 0.66 | 0.867243 |
Target: 5'- gGCGgcgCgGCgcCCgggGGGCUGCGGgCCu -3' miRNA: 3'- aUGCa--GaUGaaGGa--CCCGAUGCCgGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 109888 | 0.66 | 0.902127 |
Target: 5'- gGCGg--GCgccCCgGGGCUACaGCCCc -3' miRNA: 3'- aUGCagaUGaa-GGaCCCGAUGcCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 104671 | 0.71 | 0.652688 |
Target: 5'- gGCGUgUGCUgcggcagcgCCUGGGCcACcGCCCc -3' miRNA: 3'- aUGCAgAUGAa--------GGACCCGaUGcCGGG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 103723 | 0.67 | 0.851743 |
Target: 5'- gGCGUCUAgcucCUUCUU-GGCgGCGGCgCCc -3' miRNA: 3'- aUGCAGAU----GAAGGAcCCGaUGCCG-GG- -5' |
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23841 | 5' | -55.9 | NC_005261.1 | + | 99569 | 0.71 | 0.611329 |
Target: 5'- gGCGUCguaGCU--CUGGGcCUGCGcGCCCa -3' miRNA: 3'- aUGCAGa--UGAagGACCC-GAUGC-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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