miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 5' -55.9 NC_005261.1 + 94860 0.69 0.71404
Target:  5'- gGCGcUCgcgcACggCCcGGGCggGCGGCCCg -3'
miRNA:   3'- aUGC-AGa---UGaaGGaCCCGa-UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 95795 0.66 0.867243
Target:  5'- cGCG-CUGCUagccggcgCCggcggGGGCUcGCGGUCCu -3'
miRNA:   3'- aUGCaGAUGAa-------GGa----CCCGA-UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 96748 0.68 0.772816
Target:  5'- --aGUCc-CggCCUGGGCcGCGGCCUu -3'
miRNA:   3'- augCAGauGaaGGACCCGaUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 99569 0.71 0.611329
Target:  5'- gGCGUCguaGCU--CUGGGcCUGCGcGCCCa -3'
miRNA:   3'- aUGCAGa--UGAagGACCC-GAUGC-CGGG- -5'
23841 5' -55.9 NC_005261.1 + 103723 0.67 0.851743
Target:  5'- gGCGUCUAgcucCUUCUU-GGCgGCGGCgCCc -3'
miRNA:   3'- aUGCAGAU----GAAGGAcCCGaUGCCG-GG- -5'
23841 5' -55.9 NC_005261.1 + 104671 0.71 0.652688
Target:  5'- gGCGUgUGCUgcggcagcgCCUGGGCcACcGCCCc -3'
miRNA:   3'- aUGCAgAUGAa--------GGACCCGaUGcCGGG- -5'
23841 5' -55.9 NC_005261.1 + 109888 0.66 0.902127
Target:  5'- gGCGg--GCgccCCgGGGCUACaGCCCc -3'
miRNA:   3'- aUGCagaUGaa-GGaCCCGAUGcCGGG- -5'
23841 5' -55.9 NC_005261.1 + 110244 0.66 0.867243
Target:  5'- gGCGgcgCgGCgcCCgggGGGCUGCGGgCCu -3'
miRNA:   3'- aUGCa--GaUGaaGGa--CCCGAUGCCgGG- -5'
23841 5' -55.9 NC_005261.1 + 111602 0.69 0.763286
Target:  5'- cGCGgaguggGCgcggCUGGGCUGCGGCgCCg -3'
miRNA:   3'- aUGCaga---UGaag-GACCCGAUGCCG-GG- -5'
23841 5' -55.9 NC_005261.1 + 115414 0.7 0.693775
Target:  5'- cGCGggcgGCagCCgGGGCcGCGGCCCg -3'
miRNA:   3'- aUGCaga-UGaaGGaCCCGaUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 117912 0.67 0.85491
Target:  5'- aGCGgCUGCgcgggaacgaaggCC--GGCUGCGGCCCg -3'
miRNA:   3'- aUGCaGAUGaa-----------GGacCCGAUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 118172 0.66 0.888862
Target:  5'- gGCGgg-GCUUgccgUCUGGGCcGCGGgCCCc -3'
miRNA:   3'- aUGCagaUGAA----GGACCCGaUGCC-GGG- -5'
23841 5' -55.9 NC_005261.1 + 118343 0.67 0.85491
Target:  5'- cUGCGggCUGCUccucggCCUcucggccgggcgcugGGGCgcGCGGCCCg -3'
miRNA:   3'- -AUGCa-GAUGAa-----GGA---------------CCCGa-UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 118814 0.79 0.234024
Target:  5'- gGCGUCUGCgcCCUGGGC-GCGGCaCUg -3'
miRNA:   3'- aUGCAGAUGaaGGACCCGaUGCCG-GG- -5'
23841 5' -55.9 NC_005261.1 + 118909 0.69 0.743877
Target:  5'- cUGCGUCUGggUCCggcgccgcGGGC-GCGGCgCCg -3'
miRNA:   3'- -AUGCAGAUgaAGGa-------CCCGaUGCCG-GG- -5'
23841 5' -55.9 NC_005261.1 + 118984 0.67 0.859598
Target:  5'- cGCGcUgUGCUUCUgcgucgGGGcCUGCugGGCCCg -3'
miRNA:   3'- aUGC-AgAUGAAGGa-----CCC-GAUG--CCGGG- -5'
23841 5' -55.9 NC_005261.1 + 120408 0.74 0.461947
Target:  5'- gGCGUCUGCgcugagcggCCUGGGCUggugaacaugcGCGGCg- -3'
miRNA:   3'- aUGCAGAUGaa-------GGACCCGA-----------UGCCGgg -5'
23841 5' -55.9 NC_005261.1 + 120601 0.66 0.902127
Target:  5'- -uCGcCUGCggCCUcggcgccgugGGGCUccugcuggugGCGGCCCu -3'
miRNA:   3'- auGCaGAUGaaGGA----------CCCGA----------UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 123896 0.67 0.859598
Target:  5'- cGCGgaagGCcgCCgcugUGGGgUGCGGCCCg -3'
miRNA:   3'- aUGCaga-UGaaGG----ACCCgAUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 127898 0.76 0.365484
Target:  5'- -cCGUCggGCccgggCCUGGGCUugGGCUCg -3'
miRNA:   3'- auGCAGa-UGaa---GGACCCGAugCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.