miRNA display CGI


Results 41 - 60 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 51002 0.67 0.460886
Target:  5'- cGCgUGGGCgCGGcGGGAgcUCGGCGaGcGCCa -3'
miRNA:   3'- -CG-ACCUG-GCC-CCCU--AGCCGCgC-CGGg -5'
23842 3' -64.4 NC_005261.1 + 31185 0.67 0.460886
Target:  5'- cGCUGGcggccuacuGCCGccccGaGGucgCGGCGCGGCUCg -3'
miRNA:   3'- -CGACC---------UGGCc---C-CCua-GCCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 118673 0.67 0.461758
Target:  5'- gGCUGaGGgCGGcGGGcgcuggcgcacgcgCGGCGUGGUCCu -3'
miRNA:   3'- -CGAC-CUgGCC-CCCua------------GCCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 15029 0.67 0.468764
Target:  5'- gGCgGGuGCCGGGGGcguagcgggggggGUCGGgguCGCGGCg- -3'
miRNA:   3'- -CGaCC-UGGCCCCC-------------UAGCC---GCGCCGgg -5'
23842 3' -64.4 NC_005261.1 + 23171 0.67 0.468764
Target:  5'- gGCaGGcgcGCCGGGGGcgacagCGaGCGCgccgcggGGCCCg -3'
miRNA:   3'- -CGaCC---UGGCCCCCua----GC-CGCG-------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 118012 0.67 0.468764
Target:  5'- cGCUGGACgcugucggacgcaCGcGGGGccCGGcCGCGacGCCCg -3'
miRNA:   3'- -CGACCUG-------------GC-CCCCuaGCC-GCGC--CGGG- -5'
23842 3' -64.4 NC_005261.1 + 36573 0.67 0.469644
Target:  5'- aGCU-GAgCGGGGGccCGcCGCGGCCa -3'
miRNA:   3'- -CGAcCUgGCCCCCuaGCcGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 134180 0.67 0.469644
Target:  5'- cGCUGcuugCGGaGGGccUGGCGCGGCUCg -3'
miRNA:   3'- -CGACcug-GCC-CCCuaGCCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 49585 0.67 0.460886
Target:  5'- --cGGGCuCGGGGcGcgCGGCGCuGCUg -3'
miRNA:   3'- cgaCCUG-GCCCC-CuaGCCGCGcCGGg -5'
23842 3' -64.4 NC_005261.1 + 34925 0.67 0.460886
Target:  5'- cGC-GGccACgCGGGGGGcggcCGGCGCgacccgGGCCCg -3'
miRNA:   3'- -CGaCC--UG-GCCCCCUa---GCCGCG------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 128091 0.67 0.505485
Target:  5'- aGCgGGuuaaCGGGcGAgCGGCGCGGCgCg -3'
miRNA:   3'- -CGaCCug--GCCCcCUaGCCGCGCCGgG- -5'
23842 3' -64.4 NC_005261.1 + 43102 0.67 0.49641
Target:  5'- cGCUacgaGGACgUGGcgcGGGAUUGGCGC-GCCUa -3'
miRNA:   3'- -CGA----CCUG-GCC---CCCUAGCCGCGcCGGG- -5'
23842 3' -64.4 NC_005261.1 + 29128 0.67 0.505485
Target:  5'- cCUGGcGCCGGGGGG-CGcccCGCcGGaCCCg -3'
miRNA:   3'- cGACC-UGGCCCCCUaGCc--GCG-CC-GGG- -5'
23842 3' -64.4 NC_005261.1 + 33064 0.67 0.505485
Target:  5'- --cGGcGCCGGGGacgCGGCgcugGCGGCCg -3'
miRNA:   3'- cgaCC-UGGCCCCcuaGCCG----CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 33820 0.67 0.505485
Target:  5'- uUUGGgcgGCCGGGG----GGCGCGGgCCCc -3'
miRNA:   3'- cGACC---UGGCCCCcuagCCGCGCC-GGG- -5'
23842 3' -64.4 NC_005261.1 + 45614 0.67 0.505485
Target:  5'- ----cACCGGcGGcgCGGCGCGGCgCg -3'
miRNA:   3'- cgaccUGGCCcCCuaGCCGCGCCGgG- -5'
23842 3' -64.4 NC_005261.1 + 68604 0.67 0.505485
Target:  5'- aGCgGGGCCgacggcguGGGGGAggauGCGCGcccGCCCg -3'
miRNA:   3'- -CGaCCUGG--------CCCCCUagc-CGCGC---CGGG- -5'
23842 3' -64.4 NC_005261.1 + 138134 0.67 0.49641
Target:  5'- cGCgacGGCCGGcGGGAU-GGCGCGGg-- -3'
miRNA:   3'- -CGac-CUGGCC-CCCUAgCCGCGCCggg -5'
23842 3' -64.4 NC_005261.1 + 137996 0.67 0.460015
Target:  5'- gGCUGcggcggcGGCUGcGGcGGcccgcagccCGGCGCGGCCCg -3'
miRNA:   3'- -CGAC-------CUGGC-CC-CCua-------GCCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 325 0.67 0.460015
Target:  5'- gGCUGcggcggcGGCUGcGGcGGcccgcagccCGGCGCGGCCCg -3'
miRNA:   3'- -CGAC-------CUGGC-CC-CCua-------GCCGCGCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.