Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23842 | 3' | -64.4 | NC_005261.1 | + | 62895 | 0.66 | 0.514631 |
Target: 5'- cGCgcgaGGCgGGGcGGggCGGaCGCGcGCCCu -3' miRNA: 3'- -CGac--CUGgCCC-CCuaGCC-GCGC-CGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 81489 | 0.66 | 0.523843 |
Target: 5'- aGCaGGGCCGcGGcuaGcgCGGCGCGcGCgCCg -3' miRNA: 3'- -CGaCCUGGC-CCc--CuaGCCGCGC-CG-GG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 32143 | 0.66 | 0.54245 |
Target: 5'- ----cGCUGGGGGcUCGGCgcgccgcuGCGGCCg -3' miRNA: 3'- cgaccUGGCCCCCuAGCCG--------CGCCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 90197 | 0.66 | 0.523843 |
Target: 5'- cGCagGGAgCGcGGGGG-CGGCGgaGcGCCCu -3' miRNA: 3'- -CGa-CCUgGC-CCCCUaGCCGCg-C-CGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 71771 | 0.66 | 0.513713 |
Target: 5'- aGCcGGACCGcGGcccGcUCGcagcugaGCGCGGCCCg -3' miRNA: 3'- -CGaCCUGGC-CCc--CuAGC-------CGCGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 119221 | 0.66 | 0.523843 |
Target: 5'- -aUGGcccuGCCGGGGcGAgcgUGGCcgaucGCGGCCa -3' miRNA: 3'- cgACC----UGGCCCC-CUa--GCCG-----CGCCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 128793 | 0.66 | 0.523843 |
Target: 5'- uCUGGGcgcCCGGGcccgCGGCGgGGCUCg -3' miRNA: 3'- cGACCU---GGCCCccuaGCCGCgCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 13104 | 0.66 | 0.523843 |
Target: 5'- gGCUcGGCuCGGGGGcGUCGGC--GGCCg -3' miRNA: 3'- -CGAcCUG-GCCCCC-UAGCCGcgCCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 129728 | 0.66 | 0.514631 |
Target: 5'- gGCUGcAgCGGcaGGG-CGGCGgGGCCCg -3' miRNA: 3'- -CGACcUgGCCc-CCUaGCCGCgCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 92136 | 0.66 | 0.523843 |
Target: 5'- aGCUcGGGCUGGGccaGGAccUCGGCgagcGCGcGCUCg -3' miRNA: 3'- -CGA-CCUGGCCC---CCU--AGCCG----CGC-CGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 97504 | 0.66 | 0.514631 |
Target: 5'- cGCcgGGGCCGccGGAacguuUCGGCucgccgcgaucgGCGGCCCc -3' miRNA: 3'- -CGa-CCUGGCccCCU-----AGCCG------------CGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 38936 | 0.66 | 0.54245 |
Target: 5'- aGCcgGcGGCCGGGcGGGccgCGGCGCgcgGGCUg -3' miRNA: 3'- -CGa-C-CUGGCCC-CCUa--GCCGCG---CCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 30703 | 0.66 | 0.533117 |
Target: 5'- gGgaGGcCCGcGGGAgcccCGGCGCcgggccgccaGGCCCg -3' miRNA: 3'- -CgaCCuGGCcCCCUa---GCCGCG----------CCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 59412 | 0.66 | 0.54245 |
Target: 5'- cGCcGGcGCCGGcGcuGUC-GCGCGGCCCg -3' miRNA: 3'- -CGaCC-UGGCC-CccUAGcCGCGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 24400 | 0.66 | 0.514631 |
Target: 5'- gGCgGGGCgguccUGGGGGcUCGGauccucgguUGCGGUCCg -3' miRNA: 3'- -CGaCCUG-----GCCCCCuAGCC---------GCGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 67062 | 0.66 | 0.523843 |
Target: 5'- gGCgGGcgcGCgCGGGGGcucgcUCGG-GCGGUCCa -3' miRNA: 3'- -CGaCC---UG-GCCCCCu----AGCCgCGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 74698 | 0.66 | 0.515549 |
Target: 5'- aGCUGGccGCCGcGcGGGcgCGGaaccgggccgcggcaGCGGCCg -3' miRNA: 3'- -CGACC--UGGC-C-CCCuaGCCg--------------CGCCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 118914 | 0.66 | 0.54245 |
Target: 5'- uCUGGGuCCGGcgccgcGGGcgCGGCGCcgcgcggcuGGCCg -3' miRNA: 3'- cGACCU-GGCC------CCCuaGCCGCG---------CCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 12316 | 0.66 | 0.523843 |
Target: 5'- cGCguaGCCGGcGGGcgCgcgcuuggccGGCGCGGCCg -3' miRNA: 3'- -CGaccUGGCC-CCCuaG----------CCGCGCCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 72972 | 0.67 | 0.460886 |
Target: 5'- cGCc--GCCGcGGGGGUCcgcgaGCGCGGCCa -3' miRNA: 3'- -CGaccUGGC-CCCCUAGc----CGCGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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