miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 14741 0.67 0.478486
Target:  5'- cGgUGG-CaGGGGcGAUCGGCGCcGCgCCg -3'
miRNA:   3'- -CgACCuGgCCCC-CUAGCCGCGcCG-GG- -5'
23842 3' -64.4 NC_005261.1 + 14950 0.7 0.336865
Target:  5'- cGCUGGAagcgagcgggcgugcCUGGGGcGA-CuGCGCGGCCg -3'
miRNA:   3'- -CGACCU---------------GGCCCC-CUaGcCGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 15029 0.67 0.468764
Target:  5'- gGCgGGuGCCGGGGGcguagcgggggggGUCGGgguCGCGGCg- -3'
miRNA:   3'- -CGaCC-UGGCCCCC-------------UAGCC---GCGCCGgg -5'
23842 3' -64.4 NC_005261.1 + 15278 0.72 0.245594
Target:  5'- gGCgccGCCGGGGcGcgCGGuCGCGGCCUc -3'
miRNA:   3'- -CGaccUGGCCCC-CuaGCC-GCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 15947 0.68 0.435146
Target:  5'- gGCaGGAgCCGGGGGcgagUGGCGggcgggggagGGCCCg -3'
miRNA:   3'- -CGaCCU-GGCCCCCua--GCCGCg---------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 16162 0.69 0.386272
Target:  5'- gGCaGGGCaguaGGGGGcgCgGGCGUGGCg- -3'
miRNA:   3'- -CGaCCUGg---CCCCCuaG-CCGCGCCGgg -5'
23842 3' -64.4 NC_005261.1 + 16265 0.71 0.299332
Target:  5'- cGCcgGGGCCGGGcuucggcucgcccGGGggGGCGCcgucgGGCCCa -3'
miRNA:   3'- -CGa-CCUGGCCC-------------CCUagCCGCG-----CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 17312 0.71 0.293507
Target:  5'- ---cGGCCGGGGucgCGGCcCGGCCCg -3'
miRNA:   3'- cgacCUGGCCCCcuaGCCGcGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 19947 0.71 0.287139
Target:  5'- cCUGGG-CGGGGG--UGGgGCGGCCUc -3'
miRNA:   3'- cGACCUgGCCCCCuaGCCgCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 20550 0.66 0.522919
Target:  5'- uGCUGGACguggCGGcGGGcugcgcagCGGCGCcggcggcgcggguGGCCUa -3'
miRNA:   3'- -CGACCUG----GCC-CCCua------GCCGCG-------------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 21759 0.7 0.347679
Target:  5'- cCUGGagcgcgcGCCGGGcGAgccgccgCGGCGCGGgCCg -3'
miRNA:   3'- cGACC-------UGGCCCcCUa------GCCGCGCCgGG- -5'
23842 3' -64.4 NC_005261.1 + 22569 0.68 0.443634
Target:  5'- gGgaGGGgaGGGGGAgagCGGCggagGCGGCgCa -3'
miRNA:   3'- -CgaCCUggCCCCCUa--GCCG----CGCCGgG- -5'
23842 3' -64.4 NC_005261.1 + 22665 0.66 0.565057
Target:  5'- cGCcugGGcggcgcccgagugccGCCGGGGGAcgggccCGGCGacgaGGCCg -3'
miRNA:   3'- -CGa--CC---------------UGGCCCCCUa-----GCCGCg---CCGGg -5'
23842 3' -64.4 NC_005261.1 + 22744 0.72 0.262756
Target:  5'- --cGGGCgCGGGG---CGGCgGCGGCCCa -3'
miRNA:   3'- cgaCCUG-GCCCCcuaGCCG-CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 22778 0.66 0.56127
Target:  5'- gGC-GGGCCccgcgagaaGGGGGUUGuCGCGGCCg -3'
miRNA:   3'- -CGaCCUGGc--------CCCCUAGCcGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 22977 0.73 0.214064
Target:  5'- --aGGACCGGGaGGAggCGGCggaggaagaggGgGGCCCg -3'
miRNA:   3'- cgaCCUGGCCC-CCUa-GCCG-----------CgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 23171 0.67 0.468764
Target:  5'- gGCaGGcgcGCCGGGGGcgacagCGaGCGCgccgcggGGCCCg -3'
miRNA:   3'- -CGaCC---UGGCCCCCua----GC-CGCG-------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 23623 0.7 0.334023
Target:  5'- uGCcgGGGCgCGgcGGGGGUCGG-GCGGCUg -3'
miRNA:   3'- -CGa-CCUG-GC--CCCCUAGCCgCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 23910 0.68 0.416807
Target:  5'- cGCUGGGCUGGgccagcuGGGGUgGGCucaccucGCGGCg- -3'
miRNA:   3'- -CGACCUGGCC-------CCCUAgCCG-------CGCCGgg -5'
23842 3' -64.4 NC_005261.1 + 24126 0.7 0.334023
Target:  5'- gGCgGGGgUGGGGGcuggGUgGGCGgGGCUCa -3'
miRNA:   3'- -CGaCCUgGCCCCC----UAgCCGCgCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.