miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 78 0.69 0.370805
Target:  5'- cGCgGGGgCGGGGug-CGGgGCGcGCCCc -3'
miRNA:   3'- -CGaCCUgGCCCCcuaGCCgCGC-CGGG- -5'
23842 3' -64.4 NC_005261.1 + 153 0.68 0.435146
Target:  5'- gGCaGGGCUGGcGGaGUUGGCGgGGCUg -3'
miRNA:   3'- -CGaCCUGGCC-CCcUAGCCGCgCCGGg -5'
23842 3' -64.4 NC_005261.1 + 325 0.67 0.460015
Target:  5'- gGCUGcggcggcGGCUGcGGcGGcccgcagccCGGCGCGGCCCg -3'
miRNA:   3'- -CGAC-------CUGGC-CC-CCua-------GCCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 463 0.67 0.49641
Target:  5'- cGCgacGGCCGGcGGGAU-GGCGCGGg-- -3'
miRNA:   3'- -CGac-CUGGCC-CCCUAgCCGCGCCggg -5'
23842 3' -64.4 NC_005261.1 + 526 0.69 0.386272
Target:  5'- cGCgggcGGGCgGGGGGcagggCGGacgGCGGCUCg -3'
miRNA:   3'- -CGa---CCUGgCCCCCua---GCCg--CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 1187 0.79 0.081105
Target:  5'- gGCcgGGGCCGGGGccggGcgCGGCGCGGaCCCc -3'
miRNA:   3'- -CGa-CCUGGCCCC----CuaGCCGCGCC-GGG- -5'
23842 3' -64.4 NC_005261.1 + 2676 0.66 0.550895
Target:  5'- cGCUGGGgacCCGGcGGcgcgccggcuuuuGGcCGGCGCcgGGCCCc -3'
miRNA:   3'- -CGACCU---GGCC-CC-------------CUaGCCGCG--CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 2792 0.71 0.274731
Target:  5'- gGCUGccgccggcGGCCGGGaGGGgcCGG-GCGGCCCc -3'
miRNA:   3'- -CGAC--------CUGGCCC-CCUa-GCCgCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 2978 0.78 0.096594
Target:  5'- gGCUGaGGCUGGGGc-UCGGCcugGCGGCCCg -3'
miRNA:   3'- -CGAC-CUGGCCCCcuAGCCG---CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 4563 0.75 0.153801
Target:  5'- gGCUGGAUccgCGGGcGGGUcCGGCGgGGCgCCc -3'
miRNA:   3'- -CGACCUG---GCCC-CCUA-GCCGCgCCG-GG- -5'
23842 3' -64.4 NC_005261.1 + 5488 0.67 0.505485
Target:  5'- cGCgc-GCCGGGGGGUagcuggggccgCGGCaGCGGCg- -3'
miRNA:   3'- -CGaccUGGCCCCCUA-----------GCCG-CGCCGgg -5'
23842 3' -64.4 NC_005261.1 + 6235 0.67 0.47317
Target:  5'- aGgUGcGcCCGGGGaGGgccugcccgccccgCGGgGCGGCCCg -3'
miRNA:   3'- -CgAC-CuGGCCCC-CUa-------------GCCgCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 6439 0.66 0.523843
Target:  5'- gGC-GGuCCGGGGGc-CGGCcggGCuGCCCg -3'
miRNA:   3'- -CGaCCuGGCCCCCuaGCCG---CGcCGGG- -5'
23842 3' -64.4 NC_005261.1 + 9126 0.69 0.385488
Target:  5'- cGCcgGGACUGGGGGcgggugcaggcaaAUCgggcugggaccuGGCGCcGCCCg -3'
miRNA:   3'- -CGa-CCUGGCCCCC-------------UAG------------CCGCGcCGGG- -5'
23842 3' -64.4 NC_005261.1 + 9629 0.74 0.16925
Target:  5'- gGCgGGGgUGGGGGcuggGUgGGCGgGGCCCa -3'
miRNA:   3'- -CGaCCUgGCCCCC----UAgCCGCgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 12077 0.66 0.522919
Target:  5'- aGC-GGcguccgcGCCGGGGcGGcucaaaGGCGCGGCgCCa -3'
miRNA:   3'- -CGaCC-------UGGCCCC-CUag----CCGCGCCG-GG- -5'
23842 3' -64.4 NC_005261.1 + 12316 0.66 0.523843
Target:  5'- cGCguaGCCGGcGGGcgCgcgcuuggccGGCGCGGCCg -3'
miRNA:   3'- -CGaccUGGCC-CCCuaG----------CCGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 13104 0.66 0.523843
Target:  5'- gGCUcGGCuCGGGGGcGUCGGC--GGCCg -3'
miRNA:   3'- -CGAcCUG-GCCCCC-UAGCCGcgCCGGg -5'
23842 3' -64.4 NC_005261.1 + 14279 0.71 0.287139
Target:  5'- gGCUgGGGCUGGGGccaaGGC-CGGCCCc -3'
miRNA:   3'- -CGA-CCUGGCCCCcuagCCGcGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 14362 0.71 0.293507
Target:  5'- aGCcGcGGCCGGGG---CGGCGCgguGGCCCg -3'
miRNA:   3'- -CGaC-CUGGCCCCcuaGCCGCG---CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.