miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 138197 0.69 0.386272
Target:  5'- cGCgggcGGGCgGGGGGcagggCGGacgGCGGCUCg -3'
miRNA:   3'- -CGa---CCUGgCCCCCua---GCCg--CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 138134 0.67 0.49641
Target:  5'- cGCgacGGCCGGcGGGAU-GGCGCGGg-- -3'
miRNA:   3'- -CGac-CUGGCC-CCCUAgCCGCGCCggg -5'
23842 3' -64.4 NC_005261.1 + 137996 0.67 0.460015
Target:  5'- gGCUGcggcggcGGCUGcGGcGGcccgcagccCGGCGCGGCCCg -3'
miRNA:   3'- -CGAC-------CUGGC-CC-CCua-------GCCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 137836 0.68 0.435146
Target:  5'- gGCaGGGCUGGcGGaGUUGGCGgGGCUg -3'
miRNA:   3'- -CGaCCUGGCC-CCcUAGCCGCgCCGGg -5'
23842 3' -64.4 NC_005261.1 + 137761 0.69 0.370805
Target:  5'- cGCgGGGgCGGGGug-CGGgGCGcGCCCc -3'
miRNA:   3'- -CGaCCUgGCCCCcuaGCCgCGC-CGGG- -5'
23842 3' -64.4 NC_005261.1 + 136392 0.7 0.306572
Target:  5'- uGCcgGGACUGGGGGcggacgugguGUCGGagccgcaguCGCaGGCCCc -3'
miRNA:   3'- -CGa-CCUGGCCCCC----------UAGCC---------GCG-CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 134990 0.67 0.460886
Target:  5'- --gGGGCCGccGGGGcgCcccuGGCGCggcgGGCCCg -3'
miRNA:   3'- cgaCCUGGC--CCCCuaG----CCGCG----CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 134728 0.66 0.523843
Target:  5'- ---cGGCCGGGacccGGAcUCGGCGaCGGCaCCc -3'
miRNA:   3'- cgacCUGGCCC----CCU-AGCCGC-GCCG-GG- -5'
23842 3' -64.4 NC_005261.1 + 134180 0.67 0.469644
Target:  5'- cGCUGcuugCGGaGGGccUGGCGCGGCUCg -3'
miRNA:   3'- -CGACcug-GCC-CCCuaGCCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 132628 0.67 0.504574
Target:  5'- cGCUGGcGCCGaggacgcGGGcgCGGCggcccuaGCGGCCg -3'
miRNA:   3'- -CGACC-UGGCc------CCCuaGCCG-------CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 132046 0.71 0.274122
Target:  5'- cCUGGACCccGGGGAgguggCGGCcgaggucGCGGCCg -3'
miRNA:   3'- cGACCUGGc-CCCCUa----GCCG-------CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 131913 0.69 0.389416
Target:  5'- cGCUGGACgGGcuuuuuggcgcgcgcGGGAccgCGGUGCccgcGCCCg -3'
miRNA:   3'- -CGACCUGgCC---------------CCCUa--GCCGCGc---CGGG- -5'
23842 3' -64.4 NC_005261.1 + 130559 0.75 0.157162
Target:  5'- uGCUGGgcggcccGCCGGGcGGAagCGccgccGCGCGGCCCc -3'
miRNA:   3'- -CGACC-------UGGCCC-CCUa-GC-----CGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 129728 0.66 0.514631
Target:  5'- gGCUGcAgCGGcaGGG-CGGCGgGGCCCg -3'
miRNA:   3'- -CGACcUgGCCc-CCUaGCCGCgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 129671 0.71 0.274731
Target:  5'- gGCgGGACCGGGGGcgucgcgacUCGGgcCGgGGCCg -3'
miRNA:   3'- -CGaCCUGGCCCCCu--------AGCC--GCgCCGGg -5'
23842 3' -64.4 NC_005261.1 + 128887 0.66 0.560325
Target:  5'- gGCggGGGCCGGGuGGGaggCGG-GCGucgaaguGCCCu -3'
miRNA:   3'- -CGa-CCUGGCCC-CCUa--GCCgCGC-------CGGG- -5'
23842 3' -64.4 NC_005261.1 + 128793 0.66 0.523843
Target:  5'- uCUGGGcgcCCGGGcccgCGGCGgGGCUCg -3'
miRNA:   3'- cGACCU---GGCCCccuaGCCGCgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 128091 0.67 0.505485
Target:  5'- aGCgGGuuaaCGGGcGAgCGGCGCGGCgCg -3'
miRNA:   3'- -CGaCCug--GCCCcCUaGCCGCGCCGgG- -5'
23842 3' -64.4 NC_005261.1 + 127663 0.68 0.418455
Target:  5'- cGCgGGuuCGGGGcGGgaCGGCgGCGGCCg -3'
miRNA:   3'- -CGaCCugGCCCC-CUa-GCCG-CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 127334 0.69 0.386272
Target:  5'- cGCggGGGCCGGaGcGGcggGGCGCugGGCCCg -3'
miRNA:   3'- -CGa-CCUGGCC-C-CCuagCCGCG--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.