miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 44950 0.65 0.569799
Target:  5'- cGCUGGagagccuGCUGcGGGA-CGcGCGCgagGGCCCg -3'
miRNA:   3'- -CGACC-------UGGCcCCCUaGC-CGCG---CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 90197 0.66 0.523843
Target:  5'- cGCagGGAgCGcGGGGG-CGGCGgaGcGCCCu -3'
miRNA:   3'- -CGa-CCUgGC-CCCCUaGCCGCg-C-CGGG- -5'
23842 3' -64.4 NC_005261.1 + 24400 0.66 0.514631
Target:  5'- gGCgGGGCgguccUGGGGGcUCGGauccucgguUGCGGUCCg -3'
miRNA:   3'- -CGaCCUG-----GCCCCCuAGCC---------GCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 12316 0.66 0.523843
Target:  5'- cGCguaGCCGGcGGGcgCgcgcuuggccGGCGCGGCCg -3'
miRNA:   3'- -CGaccUGGCC-CCCuaG----------CCGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 74698 0.66 0.515549
Target:  5'- aGCUGGccGCCGcGcGGGcgCGGaaccgggccgcggcaGCGGCCg -3'
miRNA:   3'- -CGACC--UGGC-C-CCCuaGCCg--------------CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 129728 0.66 0.514631
Target:  5'- gGCUGcAgCGGcaGGG-CGGCGgGGCCCg -3'
miRNA:   3'- -CGACcUgGCCc-CCUaGCCGCgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 30412 0.66 0.514631
Target:  5'- uGC-GGGCCGGGGcaccgCGG-GCGGaCCUg -3'
miRNA:   3'- -CGaCCUGGCCCCcua--GCCgCGCC-GGG- -5'
23842 3' -64.4 NC_005261.1 + 13104 0.66 0.523843
Target:  5'- gGCUcGGCuCGGGGGcGUCGGC--GGCCg -3'
miRNA:   3'- -CGAcCUG-GCCCCC-UAGCCGcgCCGGg -5'
23842 3' -64.4 NC_005261.1 + 128793 0.66 0.523843
Target:  5'- uCUGGGcgcCCGGGcccgCGGCGgGGCUCg -3'
miRNA:   3'- cGACCU---GGCCCccuaGCCGCgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 62895 0.66 0.514631
Target:  5'- cGCgcgaGGCgGGGcGGggCGGaCGCGcGCCCu -3'
miRNA:   3'- -CGac--CUGgCCC-CCuaGCC-GCGC-CGGG- -5'
23842 3' -64.4 NC_005261.1 + 20550 0.66 0.522919
Target:  5'- uGCUGGACguggCGGcGGGcugcgcagCGGCGCcggcggcgcggguGGCCUa -3'
miRNA:   3'- -CGACCUG----GCC-CCCua------GCCGCG-------------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 97504 0.66 0.514631
Target:  5'- cGCcgGGGCCGccGGAacguuUCGGCucgccgcgaucgGCGGCCCc -3'
miRNA:   3'- -CGa-CCUGGCccCCU-----AGCCG------------CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 6439 0.66 0.523843
Target:  5'- gGC-GGuCCGGGGGc-CGGCcggGCuGCCCg -3'
miRNA:   3'- -CGaCCuGGCCCCCuaGCCG---CGcCGGG- -5'
23842 3' -64.4 NC_005261.1 + 67062 0.66 0.523843
Target:  5'- gGCgGGcgcGCgCGGGGGcucgcUCGG-GCGGUCCa -3'
miRNA:   3'- -CGaCC---UG-GCCCCCu----AGCCgCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 71771 0.66 0.513713
Target:  5'- aGCcGGACCGcGGcccGcUCGcagcugaGCGCGGCCCg -3'
miRNA:   3'- -CGaCCUGGC-CCc--CuAGC-------CGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 32219 0.66 0.523843
Target:  5'- aGCUGccGGCCGcGGcGGuggccuUCuGCGCGGCCg -3'
miRNA:   3'- -CGAC--CUGGC-CC-CCu-----AGcCGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 81489 0.66 0.523843
Target:  5'- aGCaGGGCCGcGGcuaGcgCGGCGCGcGCgCCg -3'
miRNA:   3'- -CGaCCUGGC-CCc--CuaGCCGCGC-CG-GG- -5'
23842 3' -64.4 NC_005261.1 + 119221 0.66 0.523843
Target:  5'- -aUGGcccuGCCGGGGcGAgcgUGGCcgaucGCGGCCa -3'
miRNA:   3'- cgACC----UGGCCCC-CUa--GCCG-----CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 92136 0.66 0.523843
Target:  5'- aGCUcGGGCUGGGccaGGAccUCGGCgagcGCGcGCUCg -3'
miRNA:   3'- -CGA-CCUGGCCC---CCU--AGCCG----CGC-CGGG- -5'
23842 3' -64.4 NC_005261.1 + 12077 0.66 0.522919
Target:  5'- aGC-GGcguccgcGCCGGGGcGGcucaaaGGCGCGGCgCCa -3'
miRNA:   3'- -CGaCC-------UGGCCCC-CUag----CCGCGCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.