Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23842 | 3' | -64.4 | NC_005261.1 | + | 35703 | 0.87 | 0.020915 |
Target: 5'- cGgUGGGCCGGGGGcUCGGUgGCGGCCCc -3' miRNA: 3'- -CgACCUGGCCCCCuAGCCG-CGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 97094 | 0.83 | 0.043022 |
Target: 5'- gGCUGGGCCGGGGGcgCcagccgGGcCGCGGCCg -3' miRNA: 3'- -CGACCUGGCCCCCuaG------CC-GCGCCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 39774 | 0.8 | 0.069567 |
Target: 5'- -aUGGccucgaggacgucGCCGGGGGG-CGGCGCGGCCg -3' miRNA: 3'- cgACC-------------UGGCCCCCUaGCCGCGCCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 1187 | 0.79 | 0.081105 |
Target: 5'- gGCcgGGGCCGGGGccggGcgCGGCGCGGaCCCc -3' miRNA: 3'- -CGa-CCUGGCCCC----CuaGCCGCGCC-GGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 2978 | 0.78 | 0.096594 |
Target: 5'- gGCUGaGGCUGGGGc-UCGGCcugGCGGCCCg -3' miRNA: 3'- -CGAC-CUGGCCCCcuAGCCG---CGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 38268 | 0.78 | 0.095164 |
Target: 5'- cCUGGGCUGGGGGcggcuggugcacgCGGUGCuGGCCCg -3' miRNA: 3'- cGACCUGGCCCCCua-----------GCCGCG-CCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 55307 | 0.77 | 0.120635 |
Target: 5'- aGCcGGugCGGGGGGUCagggggugcuguGGgGCGGCCg -3' miRNA: 3'- -CGaCCugGCCCCCUAG------------CCgCGCCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 36918 | 0.75 | 0.165262 |
Target: 5'- cGCUGGGCCGGGacguacuccGGGgcccugcgcUGGCGCaaGGCCCg -3' miRNA: 3'- -CGACCUGGCCC---------CCUa--------GCCGCG--CCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 130559 | 0.75 | 0.157162 |
Target: 5'- uGCUGGgcggcccGCCGGGcGGAagCGccgccGCGCGGCCCc -3' miRNA: 3'- -CGACC-------UGGCCC-CCUa-GC-----CGCGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 4563 | 0.75 | 0.153801 |
Target: 5'- gGCUGGAUccgCGGGcGGGUcCGGCGgGGCgCCc -3' miRNA: 3'- -CGACCUG---GCCC-CCUA-GCCGCgCCG-GG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 73172 | 0.75 | 0.149783 |
Target: 5'- uGCUcGGCCGGGGGGagGGUGCacacgacgagguuGGCCCc -3' miRNA: 3'- -CGAcCUGGCCCCCUagCCGCG-------------CCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 97745 | 0.75 | 0.146566 |
Target: 5'- gGCaGGGgCGGGGcGGgcucggCGGCGCGGCCg -3' miRNA: 3'- -CGaCCUgGCCCC-CUa-----GCCGCGCCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 68688 | 0.75 | 0.146566 |
Target: 5'- cGCguggGGGCCGGcGcGGAcgacggCGGCGcCGGCCCu -3' miRNA: 3'- -CGa---CCUGGCC-C-CCUa-----GCCGC-GCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 56146 | 0.74 | 0.195026 |
Target: 5'- cGC-GGGCCGaGGGuGGcggcagCGGCGgGGCCCg -3' miRNA: 3'- -CGaCCUGGC-CCC-CUa-----GCCGCgCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 31003 | 0.74 | 0.195026 |
Target: 5'- gGCcgGGGCCaGGGGccCGGCGCcGGCCa -3' miRNA: 3'- -CGa-CCUGGcCCCCuaGCCGCG-CCGGg -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 74048 | 0.74 | 0.190503 |
Target: 5'- aGCgc-GCCGGGGGGcugCGGCagcugcgcgacGCGGCCCg -3' miRNA: 3'- -CGaccUGGCCCCCUa--GCCG-----------CGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 28719 | 0.74 | 0.185635 |
Target: 5'- --gGGGcCCGGGGGccUCGGCGCccuccgaGGCCCc -3' miRNA: 3'- cgaCCU-GGCCCCCu-AGCCGCG-------CCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 58280 | 0.74 | 0.183458 |
Target: 5'- cGCUcacgGGGCCGGcgcgccggggggcgcGGGGagGGgGCGGCCCa -3' miRNA: 3'- -CGA----CCUGGCC---------------CCCUagCCgCGCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 9629 | 0.74 | 0.16925 |
Target: 5'- gGCgGGGgUGGGGGcuggGUgGGCGgGGCCCa -3' miRNA: 3'- -CGaCCUgGCCCCC----UAgCCGCgCCGGG- -5' |
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23842 | 3' | -64.4 | NC_005261.1 | + | 22977 | 0.73 | 0.214064 |
Target: 5'- --aGGACCGGGaGGAggCGGCggaggaagaggGgGGCCCg -3' miRNA: 3'- cgaCCUGGCCC-CCUa-GCCG-----------CgCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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